Query= MSMg01no128_n14.b1 MSMg01no128_n14.b1 CHROMAT_FILE:
MSMg01no128_n14.b1 PHD_FILE: MSMg01no128_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:04 2005
(461 letters)
>mm_chr2_45056451_45057309
Length = 859
Score = 826 bits (427), Expect = 0.0
Identities = 449/457 (98%), Gaps = 2/457 (0%)
Strand = Plus / Minus
Query: 5 ccttgaactctcagagacttgactgactctgcctccagaatacggggattaaaggcatgc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ccttgaactctcagagacttgactgactctgcctccagaatacggggattaaaggcatgc 677
Query: 65 cccaccacttcctggcttctattattacctttattttcaatgctatttccaagcctcttc 124
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cccaccactttctagcttctattattacctttattttcaatgctatttccaagcctcttc 617
Query: 125 ccaggaatgcccaactgctgttctaaaatatgcatttactgatcttttagtcaaaaccct 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ccaagaatgcccaactgctgttctaaaatatgcatttactgatcttttagtcaaaaccct 557
Query: 185 caataatagctcatttctttcagatagtgtacaaactcttcaaggtatcacagtacggcc 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 556 caatattagctcatttctttcagatagtgtacaaactcttcaaggtatcacagtagggcc 497
Query: 245 taatttcacaaaaccttattctaagcaccacaccaccatataccatgggctaatttgcat 304
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 taatttcacaaaaccttattctaagcaccacaccacc--ataccatgggctaatttgcat 439
Query: 305 ggagaactttgactgcccataacacacatcactcacaaagtcacattttcttttctagac 364
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 438 ggagaactttgactgcccataacacacatcactcacaaagtcatattttcttttctagac 379
Query: 365 cttgttatggcactcctccaactctagcatgaactacacaaattgatttttatgaattaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cttgttatggcactcctccaactctagcatgaactacacaaattgatttttatgaattaa 319
Query: 425 ttaagcatcacctattcctacaaatttcctctgaaag 461
|||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaagcatcacctattcctacaaatttcctctgaaag 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 859
Length adjustment: 10
Effective length of query: 451
Effective length of database: 849
Effective search space: 382899
Effective search space used: 382899
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no128_n14.g1 MSMg01no128_n14.g1 CHROMAT_FILE:
MSMg01no128_n14.g1 PHD_FILE: MSMg01no128_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:05 2005
(148 letters)
>mm_chr2_44877635_44878182
Length = 548
Score = 205 bits (106), Expect = 9e-58
Identities = 129/148 (87%), Gaps = 18/148 (12%)
Strand = Plus / Plus
Query: 1 caatagaaggtgtcagacatgaagtacaccgaactgacagttttatgtggtttgaaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatagaaggtgtcagacatgaagtacaccgaactgacagttttatgtggtttgaaataa 260
Query: 61 cacaattcccacacaaaacacacgtgcatgctcgcacgcgcgcgcgcgcgcgcacacaca 120
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cacaattcccacacaaaacacacgtgcatgcttgcacgcgcgc----------------- 303
Query: 121 cacacacacacacacacagagggggggg 148
|||||||||||||||||||||||||||
Sbjct: 304 -acacacacacacacacagagggggggg 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space: 75600
Effective search space used: 75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
