BAC Information

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BAC

Clone NameMSMg01-130A03
Chromosome2 (Build37)
Map Location 141,781,299 - 141,913,589
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A03.T7 (MSMg01no130_a03.b1)MSMg01-130A03.TJ (MSMg01no130_a03.g1)
ACCAG337872AG337873
length718712
length of high quality
(start - end)
317 (48 - 364)230 (126 - 355)
definitionCHROMAT_FILE: MSMg01no130_a03.b1 PHD_FILE: MSMg01no130_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:37 2005CHROMAT_FILE: MSMg01no130_a03.g1 PHD_FILE: MSMg01no130_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,913,273 - 141,913,589)(141,781,299 - 141,781,528)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGA
ATTCCAGGCAGTTGTGCTCCACAGGATTGAGATCCTCTGCTGGAATGGAA
AGCACTTTTAACCGGGGCCATGTTTCCAGCCTGAGTATACTTTTCTTTAT
ACTCAATCTCTAGTATTAAATTATATGTTATGTTATTTTTTTCTTTTATT
GAAAATAGATCCTGCCGGGAGTGGTGGCACATGCCTTTAATTTCAGCACT
TGGGAGACAGAGGCAGGTGGATTTCTGAGTTCGAGGTCAGCCTGGTCTAC
AAAGTGAGTTCCAGGACAGCCAGGGTTACACAGAGAAACCCTGTCTCGAA
AAACAAAATAAAACATAAACACGACATAACCAACAAATAAAAAATCTTAA
TCAACAATAGATCCTTTTCTCAAATATATTGATTATATTTTCCCCTTCTT
CTACTCCTCCCAGTTCCTCCCACCTCCCCTCACTTCTGAATGCACTTCCT
TTCTGTCTCTTATCAGAAAAACACACTAACACAAAGATCCTCCAAACCAA
ACCAAACCAACAGCAGCAGTTGCAACAACAATAACTACAACTACTATTAG
AAGCCTCTTAGAGATAATAGTCAAACATGATATAATAAAATATCTATTAT
CGCAAGATAACCATATCACAGCTGGACACGGTTATCCTATAGGAAGGAAA
TGAATTCTTCAGAGTTCA
CATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCTTCGCAATTCTATAAAGAGCTGGTAATTATACCGGGCAGAA
AAGTATGCTGATGGTTTTATCCGGGCCAGGTGGCTAACTACTAATGCTTC
CAGGGATGCTGAAGACCTATAAATTATATGCCAAGAAGAGAGTTAAGTTT
ATGGTCATTGGGAAATTCTTACTTTTATCAAAGGCTAGGCTTAAGCATGA
GAGTTGGTGTGGTGTATGTGGTCAGTCAACTACCCTTGTAGTTTGGGTGT
CACTTCTGCTTCCTCACAAGGTGTCAGATAAATACTTTCAGGAAAGTGCC
AGTGAGAGCCTTTTTTTTTTCCCCCCCCCCCCCCACCAGGCAGGTCTCAG
ACTAATGGCAGGCAGTGACACAGATGAATGAAAAAAACAGTGGAAGCGGC
GTGGATACAAAGGAGCCATTTCTGAGAAGCCTGAACTTCAAAGAAAATCG
CCCACAGCAGAGAGGCTGACACGGAGCTGAATGAAAAATGAAAAATACAA
TAAAGACCAAATCTGATAGGGATTTAAATTATATGCGAAGAAAGTATTTC
TGGAGAACATGAGATGGCAGGGAGGGCTTGGCACAAACTGAAGAATTCAT
AACTTAGAATGGCTCACAACTTCTATCACTTAATCCCTGAAAATTCTCAG
CCTCCATGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a03.b1 MSMg01no130_a03.b1 CHROMAT_FILE:
MSMg01no130_a03.b1 PHD_FILE: MSMg01no130_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:37 2005
         (317 letters)



>mm_chr2_141913224_141913940
          Length = 717

 Score =  582 bits (301), Expect = e-171
 Identities = 313/317 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaattccaggcagttgtgctccacaggattgagatcctctgctggaatggaaagcactt 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaattccaggcagttgtgagccacaggattgagatcctctgctggaatggaaagcactt 307

                                                                       
Query: 61  ttaaccggggccatgtttccagcctgagtatacttttctttatactcaatctctagtatt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ttaaccggggccatgtttgcagcctgagtatacttttctttatactcaatctctagtatt 247

                                                                       
Query: 121 aaattatatgttatgttatttttttcttttattgaaaatagatcctgccgggagtggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaattatatgttatgttatttttttcttttattgaaaatagatcctgccgggagtggtgg 187

                                                                       
Query: 181 cacatgcctttaatttcagcacttgggagacagaggcaggtggatttctgagttcgaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cacatgcctttaatttcagcacttgggagacagaggcaggtggatttctgagttcgaggt 127

                                                                       
Query: 241 cagcctggtctacaaagtgagttccaggacagccagggttacacagagaaaccctgtctc 300
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 126 cagcctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctc 67

                            
Query: 301 gaaaaacaaaataaaac 317
           |||||||||||||||||
Sbjct: 66  gaaaaacaaaataaaac 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no130_a03.g1 MSMg01no130_a03.g1 CHROMAT_FILE:
MSMg01no130_a03.g1 PHD_FILE: MSMg01no130_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:37 2005
         (230 letters)



>mm_chr2_141781099_141781728
          Length = 630

 Score =  445 bits (230), Expect = e-129
 Identities = 230/230 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggtggctaactactaatgcttccagggatgctgaagacctataaattatatgccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggtggctaactactaatgcttccagggatgctgaagacctataaattatatgccaag 260

                                                                       
Query: 61  aagagagttaagtttatggtcattgggaaattcttacttttatcaaaggctaggcttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagagttaagtttatggtcattgggaaattcttacttttatcaaaggctaggcttaag 320

                                                                       
Query: 121 catgagagttggtgtggtgtatgtggtcagtcaactacccttgtagtttgggtgtcactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgagagttggtgtggtgtatgtggtcagtcaactacccttgtagtttgggtgtcactt 380

                                                             
Query: 181 ctgcttcctcacaaggtgtcagataaatactttcaggaaagtgccagtga 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcttcctcacaaggtgtcagataaatactttcaggaaagtgccagtga 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)