BAC Information

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BAC

Clone NameMSMg01-130M04
Chromosome2 (Build37)
Map Location 89,020,437 - 89,020,742
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225
Downstream geneLOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M04.T7 (MSMg01no130_m04.b1)MSMg01-130M04.TJ (MSMg01no130_m04.g1)
ACCAG338432AG338433
length7141,194
length of high quality
(start - end)
306 (62 - 367)726 (127 - 852)
definitionCHROMAT_FILE: MSMg01no130_m04.b1 PHD_FILE: MSMg01no130_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:43 2005CHROMAT_FILE: MSMg01no130_m04.g1 PHD_FILE: MSMg01no130_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCATGCCACTGCATATTAAAACACATTATTGCATATTTAT
TAAAGACCGAGTTAATGTTTTCATCACAAATATGATCATACTTCTCATTT
TTGCATCTTTAATCAATTTTTACTATTAAAGTATATCTGTTTCCACTTTC
TTTATATCTTGGATCTCAATATTTGTTTCATTCATTATTCATTTTATGTA
TGCATTTGATATATGCCTGTATTTGTATGTGTATGATCATGTGTGTGACC
TGAAAGGTAAGACATCAACATTAATTAGTGTGTTTCCTTCTATAGCTTTC
CTCCTTATTCTTTGAGTTATGTTTGCCCCCCCCCCCCTGAAGCCCAACAA
TTCAGGTAGACTTACTTAATACATTCCTATATCTTCTCATAGAACTTGAA
TTTTCATGTCTCCATGTCCCAGCACTAGAGTTATAAGCATGCCCAGTAAA
TCCTGGCATTTTGCACAAATGTTAGGAATCAGAACTCAGATTGTCATACT
TTGTAGCAAACACTTCAGCAACTGAGTCATCTCCCAGTTCCAAATGTTAT
TTTGTCATATATATTTATAAAACTATTTCGTGTTTCCACTTCCACAGCTT
TTTACATCTACTGAAGTATGAATATGACGAAAAAAGGAAATCATGGAAAT
TTAGATAAGAAACA
NCAATTCTTNNNNNATCTCATGTGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTGGCTCTGTTCCCAATT
TTTAATAGGGTTGTTACGTCCTTTGAAGTCTAACTTCTTGAGTTCTTCCT
ATATATTGGATATTAGCCCTCTATTAGACATAGGATTGGTAAAGTTCTTT
TCCCAATATGTTGGTTGCCATTTTGTCTTATTGACAGTGTCCTTTGCCTT
ACAGAAGCTTTTCAATTTTATGAGGTCCCACTTGTCAGTTCTTGATCTTA
AAGCATAAACTATTGGTGTTCTGTTCAGGAAAATTTCTTCTGTGCCCATG
TGCTCAAGGCTCTTTCCCACTTTCTCTTCTATTAGTTTCAGTGTCTCTGG
TTTTATGTGTAGGTCTTCAATCCACTTAGACTTGAGCTTTGGTACAAGGA
GATAAGAATGGATCAATTCTCATTCTTCTACATGCTAACCACCAGTTGAA
CCAGCACCATTTGCTGAAAATTCTATCTTTTTTCCACTGGATGGTTTTAG
CTCCTTTGTCAAAGATCAAGAACACTTAGGAGTTTCGGTTTATTTCTGGG
TCTTCAATTTTATTCCATTGATATACCTGACTACCCCTGTACCAATACCA
TGCAGTTTTCTACCACTCTTGCTCTGTAATAGAGCTTGAGGTCAGGGATG
GTGATTTCCCCCAGATGTTATTTTATTGTTGACAATAGTTTTTGGTACCC
TTTTTGTTGTTGTTATTCCAATCGCATTTGAGAATTACTCTTTCTAACTC
TACGAAGAATTGAGTTGGAATTGTAGTTAGTTCTTGTAGTAAGCCAACTT
GCTATTGATGAATCTTTATGTGTTTTTCAATGCTTCATTAAGCACTTTTA
TATTTATCAAGTATTATATAATTATCACGAAGTTGGCTTATACTTTTAAT
GGTGGGGGTTTTATTAAAAAATTGTTTCCCAAAAAAAAACGGAGGTCCTA
AAGGGGGTTTTTATAGGGCCTCCCGAAAAAACTTTTCCCAAAAAAAAGGC
CTGGGGGATATAATCCCCCCTCAATGGGTGGAAAATATTCCTAGATCTCC
ACCCCTATTTCTTATCCTTTTCTTCTCTCCTTTTTATTTTTTGTTTTTTG
TATACTATCTCTCCCTCTCTTCTCGTACCTACTGCCCTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m04.b1 MSMg01no130_m04.b1 CHROMAT_FILE:
MSMg01no130_m04.b1 PHD_FILE: MSMg01no130_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:43 2005
         (306 letters)



>mm_chr2_89020237_89020942
          Length = 706

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgccactgcatattaaaacacattattgcatatttattaaagaccgagttaatgtttt 60
           ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 201 catgcaactgcatattaaaacacatcattgcatatttattaaagaccgagttaatgcttt 260

                                                                       
Query: 61  catcacaaatatgatcatacttctcatttttgcatctttaatcaatttttactattaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcacaaatatgatcatacttctcatttttgcatctttaatcaatttttactattaaag 320

                                                                       
Query: 121 tatatctgtttccactttctttatatcttggatctcaatatttgtttcattcattattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatctgtttccactttctttatatcttggatctcaatatttgtttcattcattattca 380

                                                                       
Query: 181 ttttatgtatgcatttgatatatgcctgtatttgtatgtgtatgatcatgtgtgtgacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttatgtatgcatttgatatatgcctgtatttgtatgtgtatgatcatgtgtgtgacct 440

                                                                       
Query: 241 gaaaggtaagacatcaacattaattagtgtgtttccttctatagctttcctccttattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaggtaagacatcaacattaattagtgtgtttccttctatagctttcctccttattct 500

                 
Query: 301 ttgagt 306
           ||||||
Sbjct: 501 ttgagt 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)