BAC Information

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BAC

Clone NameMSMg01-131A18
Chromosome2 (Build37)
Map Location 35,556,706 - 35,557,342
singlet/doubletsinglet
Overlap geneDab2ip
Upstream geneGapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194
Downstream geneTtll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131A18.T7 (MSMg01no131_a18.b1)MSMg01-131A18.TJ (MSMg01no131_a18.g1)
ACCAG338648AG338649
length709722
length of high quality
(start - end)
638 (72 - 709)248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no131_a18.b1 PHD_FILE: MSMg01no131_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:08 2005CHROMAT_FILE: MSMg01no131_a18.g1 PHD_FILE: MSMg01no131_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGATCCGCGG
AATTCTCTTTCCCTAACACCCCCACTGGGATTTCTGCTGGATCAGACCTC
AGCAGCTAGCTGGTTCTCCGGCATAACAGGGCTGGGAAGAGATGTCCCCA
ACAAGGTTTATGTCCAGCCCTGGATTCCCAGGAGCTCAGTGCCCTTGTCC
TGACACGCTCCAGGACTGTAGCCTGGGCCTGCCTGCTACACAGATAGAGG
CCTGCAAGAGAGTCTGCTGGGCTCTCTCACTCCAGAACTGGTCAGGCTTC
TAATCTTTGGGTGTTCATCAACTCTGGAGGCATAACTTAGGAGGCAGAGA
CAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTGTACAGAGTGTGTTCAA
GGACAGCCAGCGCTACACAGAGAAACCCTGTCTCGAAAAATCAGGAAAAA
ATAATTTTTTTTAAAGGCATCCTTGGAGTTAAGTCAGCTAAGGCTGGCCC
TTTTCCTCAGATGAGGAAGTAAGGAAGTTGCGTGGTTAGGGATGCATAGG
TAACAGCTTGGGAAATGCCAGAAGGGTAGCCCAGCCTGGAATTGACTTCA
CTCATTTCCTGAAGCCTGCATGGTTGAGAGGTGGGTAAAGAGAGGGGATG
GCCACAAGTGACCGATGGCGGTTCCTGCCACTGGCTTGTTCTCTGGAGCA
CACCCCCTG
TTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGGGXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATAGCTG
AGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCTTGAGATTCCACCTCACACCAGTCAGGATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGGGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCATTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCAGAGGATCC
TGCAATACCTCTTCTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGA
AGAACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCTAGA
AGCTGGAAAGAATCCATATGCCCCTCAACAGAGGAATGGATTCAGAAAAT
GTGGTACATTTAACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCGTCCTGAGTG
AGGTAACCCAATCACAAAAGAACTCACATGATATGTACTCACTGATAAGT
GTATATTAGCCCTGAAGCTTAGAATACCCAAGATATAAGATACAATTTGC
TAAACACATGAAACTCAAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_a18.b1 MSMg01no131_a18.b1 CHROMAT_FILE:
MSMg01no131_a18.b1 PHD_FILE: MSMg01no131_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:08 2005
         (638 letters)



>mm_chr2_35556506_35557543
          Length = 1038

 Score = 1083 bits (560), Expect = 0.0
 Identities = 618/644 (95%), Gaps = 13/644 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactgggatttctgctggatcagacctcagcagctagctggttctccggcataacaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 ccactgggatttctgctggatcagacctcagcagctagctggttctcaggcttaacaggg 260

                                                                       
Query: 61  ctgggaagagatgtccccaacaaggtttatgtccagccctggattcccaggagctcagtg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaagagatgtccccaacaaggcttatgtccagccctggattcccaggagctcagtg 320

                                                                       
Query: 121 cccttgtcctgacacgctccaggactgtagcctgggcctgcctgctacacagatagaggc 180
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
Sbjct: 321 cccttgtcctgacacgctccaggactatagcctgggcctgcctgctacacagata----- 375

                                                                       
Query: 181 ctgcaagagagtctgctgggctctctcactccagaactggtcaggcttctaatctttggg 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 --gcaagagagtctgctgggctctctcactccagaactggtcaggcttctaatctttggg 433

                                                                       
Query: 241 tgttcatcaactctggaggcataacttaggaggcagagacaggtggatttctgagttcga 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgggcatcaactctggaggcataacttaggaggcagagacaggtggatttctgagttcga 493

                                                                       
Query: 301 ggccagcctggtgtacagagtgtgttcaaggacagccagcgctacacagagaaaccctgt 360
           ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 494 ggccagcctggtgtacagagtgtgttccagaacagccagggctacacagagaaaccctgt 553

                                                                       
Query: 361 ctcgaaaaatcagg--aaaaaataa----ttttttttaaaggcatccttggagttaagtc 414
           ||||||||||||||  |||||||||    |||||||||||||||||||||||||| ||||
Sbjct: 554 ctcgaaaaatcaggaaaaaaaataattttttttttttaaaggcatccttggagtttagtc 613

                                                                       
Query: 415 agctaaggctggcccttttcctcagatgaggaagtaaggaagttgcgtggttagggatgc 474
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 614 agctaaggctggcccttttcctcagatgaggaagtaaggaagttgtgtggttagggatgc 673

                                                                       
Query: 475 ataggtaacagcttgggaaatgccagaagggtagcccagcctggaattgacttcactcat 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ataggtaacagcttgggaaatgccagaagggtagcccagcctggaattgacttcactcat 733

                                                                       
Query: 535 ttcctgaagcctgcatggttgagaggtgggtaaagagaggggatggccacaagtgaccga 594
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 734 ttcctgaagcctgcatggttgagaggtgggtaaagagaggggatggctacaagtgaccga 793

                                                       
Query: 595 tggcggttcctgccactggcttgttctctggagcacaccccctg 638
           ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tggcgattcctgccactggcttgttctctggagcacaccccctg 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)