Query= MSMg01no131_b20.b1 MSMg01no131_b20.b1 CHROMAT_FILE:
MSMg01no131_b20.b1 PHD_FILE: MSMg01no131_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:13 2005
(536 letters)
>mm_chr2_127381559_127382494
Length = 936
Score = 967 bits (500), Expect = 0.0
Identities = 527/536 (98%), Gaps = 2/536 (0%)
Strand = Plus / Plus
Query: 1 tgaattctgcgcatcctcctttagccgtactcttcctgccccactaacttactctctttt 60
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 201 tgaattctgcgcatcctcctttagccatactcttcctgccccactaacttagtctctttt 260
Query: 61 ccacaacctgcttcacactgttcaatgttatatcatacaaaacatgttcttgtaaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaacctgcttcacactgttcaatgttatatcatacaaaacatgttcttgtaaaaaat 320
Query: 121 atttatagctgggtggtggtggtacatgccctttaatcccagcatctgggaggcagaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttatagctgggtggtggtggtacatgccctttaatcccagcatctgggaggcagaggc 380
Query: 181 aagagaatctctgtgagttcaaggccagcctggtctacagagatagttccaagactgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagaatctctgtgagttcaaggccagcctggtctacagagatagttccaagactgcaa 440
Query: 241 gggctacacatataaaccctatcctgaaaagtcaaaaaaaaaaaaaaagtgtatgtgcct 300
|||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gggctacacagagaaaccctatcctgaaaagtcaaaaaaaaaaaaaa-gtgtatgtgcct 499
Query: 301 gagtgtatgtgtatgagcgtgcaccacatgcatgggggagtctgcagaagcccacaagag 360
||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||
Sbjct: 500 gagtgtatgtgtatgagtgtgcaccacatgcatggggtagtctgcagaagtc-acaagag 558
Query: 361 ggcgtcagaccctctggaactggagttacaggcagttgtgagcccctctctttgctacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggcgtcagaccctctggaactggagttacaggcagttgtgagcccctctctttgctacta 618
Query: 421 ctatacaggtgctgggaactgaacccaggtcctctgcaggagcagtaagtaagagctcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctatacaggtgctgggaactgaacccaggtcctctgcaggagcagtaagtaagagctcct 678
Query: 481 cactgctgagtcccacataccaactttgttggctcttcatttccttttaaaggctc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cactgctgagtcccacataccaactttgttggctcttcatttccttttaaaggctc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_b20.g1 MSMg01no131_b20.g1 CHROMAT_FILE:
MSMg01no131_b20.g1 PHD_FILE: MSMg01no131_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:14 2005
(637 letters)
>mm_chr2_127472074_127473110
Length = 1037
Score = 1065 bits (551), Expect = 0.0
Identities = 560/563 (99%)
Strand = Plus / Minus
Query: 75 gcttatagcacccagggccaccagcccagggatgtccccatgtacaataggctgaactct 134
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1037 gcttatagcacccaggaccaccagcccagggatgtccccatgtacaataggctggactct 978
Query: 135 cccccatcaatcaatgtaaaaactatcctataggcttccctgtctacagccagatccgat 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 cccccatcaatcaatgtaaaaactatcctataggcttccctgtctacagccagatccgat 918
Query: 195 ggaggtattttctcaattgggatttcctcctgtccgatgactttagcctgtgtctagttg 254
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 917 ggaggtattttctcaattgggatttcctcctgtccgatgactttagcctgtgtcaagttg 858
Query: 255 acataaaactcaccagtacacacaatgttgacataactcttggctactgaaagcttcagc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 acataaaactcaccagtacacacaatgttgacataactcttggctactgaaagcttcagc 798
Query: 315 ctgcacgtggccaacagagagttgggactgccgttcctggtggcctcaggacagcattca 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ctgcacgtggccaacagagagttgggactgccgttcctggtggcctcaggacagcattca 738
Query: 375 tggtatggacctggcaaccctcccagaagcctgggtgtgtcaactggcacctctcagctg 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tggtatggacctggcaaccctcccagaagcctgggtgtgtcaactggcacctctcagctg 678
Query: 435 atgaggccaacttctctattcctccccggggatgaagggcagactagtgtttgatggaca 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atgaggccaacttctctattcctccccggggatgaagggcagactagtgtttgatggaca 618
Query: 495 gtctgtgttctgtggccatttcctctacttcccaagaagtcaacacacaagctcctggtc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtctgtgttctgtggccatttcctctacttcccaagaagtcaacacacaagctcctggtc 558
Query: 555 acatttacctgtaatggagctgttgggagccctgatacctgactcaagggggttgcatgt 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acatttacctgtaatggagctgttgggagccctgatacctgactcaagggggttgcatgt 498
Query: 615 gggtggtatactcttcggcttct 637
|||||||||||||||||||||||
Sbjct: 497 gggtggtatactcttcggcttct 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
