BAC Information

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BAC

Clone NameMSMg01-131C11
Chromosome2 (Build37)
Map Location 8,370,732 - 8,371,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648, LOC672230
Downstream geneLOC100040710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131C11.T7 (MSMg01no131_c11.b1)MSMg01-131C11.TJ (MSMg01no131_c11.g1)
ACCAG338729AG338730
length706704
length of high quality
(start - end)
634 (71 - 704)322 (368 - 689)
definitionCHROMAT_FILE: MSMg01no131_c11.b1 PHD_FILE: MSMg01no131_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:16 2005CHROMAT_FILE: MSMg01no131_c11.g1 PHD_FILE: MSMg01no131_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTAAATTTGCGGCGCTAAACGACTCCTTTCGAAAGAGGACCGCGGAA
TTCAATGTAACTGACGAACACATACCCAAATGTATGAGACTGAAGGAAAG
CAGTGCTAAGAAGAAAATTCATAGCACTAAGTACCTTCATAAAATAAAAA
AACTTCGAGATCCTATACAAGCAACATAAAAGCACATGTGAAAGCTCTAG
AACAAAAAGAAGCAAAGACACGTAAGAGGAGCAGATGGGAGGAAATAGTC
AAACTCAGGGCTGAAATCAATCAATTTGAAACAAAAAGAACAATACTAAA
AATCAACAAGCCCAAGAGCTGGTCCTTTGAGAACATCAACAAGATAGACA
AACCCTTAGCCAAACTTATTAAAAGGCATAGAGGCAGTATCCAAATTAAC
AAAATCAGAAATGAAAAGGGAAACATAACAACAGAAATTGAGAAAAATCA
AAACATCATTAGGTCTTACTTCAAAAGCCTGTAGTCCACAAAACTGGAAA
ATCAAATGATTTTCTAGACAGATGCCACTTTCAAAGTTAAAATCAAGGTC
AGGTAAACTATCTAAACAGTCTCATAACTCCTATAAAAATTGAACCAGTC
TTTAAACTCAAGAGAACGAAGACCAAAGTGTGAACACTTTGCCCCTTCTT
AGAATAGGAAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGG
AAGTGA
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGAAACTAAACTAGTTTTCAAGTAAAC
ACAAAGAAGTAATTTTACCTTTGTTTTTCTTTCCTAATAACATGTCTTTC
TCAAAATTAGTTTTACTAAATTAAGTTTTCCTAATTTAGTAACAGCAAGT
TATTCCTAGTTATGATTTTACTTCTTTTCTCAATCAATACAAACATTAAA
GCAATTTCCAAAGAATATAATGCAAATTAATTATATTTGAATACATATCA
GCATATTTAGGTATTATATACAGAACACAAGTTCTAAGAATAAACAAGCT
GGCAAGTACTATATGGTTTTAAGTGATTTGAATGGTAGAGAATCAGATTC
TTTAGATATAACATTTTTGTGCTTTTCTAATGGGGGGGGCTTTCACATAT
AAGGCTCCTAGATCAACAATACAATTATGAAAAGAATAATTAAAACTAAG
GGCTATTTGTGGGGTAGAATGCAAACTCAATGTAGAAGAGTTTTCTAAAA
TGTATTTCCTATATTATGATTATCTAAATAGAAATGCTAAATAACAGGGG
AGACAGAGCCCCAACTGAACCTCTCTAGTAAGCAAATCAAGCTGAGGGTG
ATTTAACCTCTGGGGCTCTGGCTCAATATTTTTCAGAGGAGNAAATTTTC
AGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_c11.g1 MSMg01no131_c11.g1 CHROMAT_FILE:
MSMg01no131_c11.g1 PHD_FILE: MSMg01no131_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:17 2005
         (322 letters)



>mm_chr2_8370732_8371454
          Length = 723

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaagtgatttgaatggtagagaatcagattctttagatataacatttttgtgcttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttaagtgatttgaatggtagagaatcagattctttagatataacatttttgtgcttttc 250

                                                                       
Query: 61  taat-ggggggggctttcacatataaggctcctagatcaacaatacaattatgaaaagaa 119
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 taatgggggggggctttcacatataaggctcctagatcaacaatacaattatgaaaagaa 190

                                                                       
Query: 120 taattaaaactaagggctatttgtggggtagaatgcaaactcaatgtagaagagttttct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 taattaaaactaagggctatttgtggggtagaatgcaaactcaatgtagaagagttttct 130

                                                                       
Query: 180 aaaatgtatttcctatattatgattatctaaatagaaatgctaaataacaggggagacag 239
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 129 aaaatgtatttcctatattatgatgatctaaatagaaatgctaaataacaggggagacag 70

                                                                       
Query: 240 agccccaactgaacctctctagtaagcaaatcaagctgagggtgatttaacctctggggc 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 69  agccccaactgaacctctctagtaagcaaatcaagctgaggttgatttaacctctgggga 10

                    
Query: 300 tctggctca 308
           |||||||||
Sbjct: 9   tctggctca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 723
Length adjustment: 9
Effective length of query: 313
Effective length of database: 714
Effective search space:   223482
Effective search space used:   223482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)