BAC Information

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BAC

Clone NameMSMg01-131G14
Chromosome2 (Build37)
Map Location 168,866,569 - 168,866,710
singlet/doubletsinglet
Overlap genenone
Upstream genePard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131G14.T7 (MSMg01no131_g14.b1)MSMg01-131G14.TJ (MSMg01no131_g14.g1)
ACCAG338922AG338923
length707745
length of high quality
(start - end)
240 (73 - 312)146 (82 - 227)
definitionCHROMAT_FILE: MSMg01no131_g14.b1 PHD_FILE: MSMg01no131_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:37 2005CHROMAT_FILE: MSMg01no131_g14.g1 PHD_FILE: MSMg01no131_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXATACGTATGCGGTCCGCGG
AATTCAGGATTACTGAAAACTCTGGCCTAAAGATTTATTTATTATTATTA
TATCTAAGTACACTGTAGCTCTCTTCAGACAGCTACCAGAAGAGGGCGTC
AGATCTCATTATAGATAGTTGTGAGCCACCATGTGGTTGCTGGGATTTGA
ACTCAGGACCTCTGGAAGAGCAGTTGGTGCTTTTAACCGCTGAGCCACCT
CTCCAGGCCAGTTCACTTCTTGTATTGTTTTGATTATTGCTTTGGGTGCA
GGTCTGTTGTGGTTGGTCAGTCGGGGCCACCTCTAGGTAAACTCTGGGAC
CACGTTTGTGCCCCAGCATCTGCTGCAGGAGGACCAGAGATTGCTGACGC
AGACAATGCCAGCCAATCAGGAACTGCTGTTTAGAAGAGATGCTTTCTTG
GGACCAGCGGGGTGGAGGGCATTAAAGGAGCTTGCTGCAGAGTTTCTCAC
CTGCTCCTGGAGTCTGTGTCATGGACTCTGTGCCACCTCCACTCCAACCT
AAGGACAGGTAGGGTCAGGTGGCGAGTCATCCAAGGAACGGTCTGTGTCT
GATCTGAGTGTCCCTCTGTCTGGTAGGAGGCCTCTGGTGTCTGCTACTCT
ATCATTACTGGATCCTTACTGGGACTCCTCTCGGATATCTTGCTGTTGTC
CTGCGTC
NCCAATGCAGTGNGTAGGCCTGGNGGCCGCCTGTTTCATACGAGGAGGTG
AACTATAGAATGTTCTCAAAATTCTCACAAAAGAAGCTAGATATGGCAGC
AGAAGTGTGCTCGCCTGGGACACACAAGCCCCACGTTCTGCCGGGAGGGA
GCATCGTCCTGCTCGGATGTGTACTGTAAAAACAGTAACCACATACACAC
GTGAGTCACGGAAGACCCGTGGGAAACTGGCAGTGTCTTCTTCCCCTTAT
AGGTCAGTCTGATAAATATCAAAGCCCTCCTCAAGGGTAGAGTGTGAATG
TTGACGATTCGTGCAAGAGTTTTTTTTTATGACGAGTTGACCATCATGTG
CAGGCTCTCATTACCTCATCTCCTTCCTTCCAGACTTTTACGGGTTGACA
CTACAGAGACCCTCCCTGGACACCAGCTAACGGCTCTTTCTCCTACTGCA
AGATTCTCATTCACTGATGCTCCTCTTTGTTGTGTAATCGGTGCCATCCC
TTCATTATATGCAGTGCCCTTCTTACCCAGCTTTTCCTCATGCGTGTCTC
TGAGACCGCCAGACTGTCCTGCCTATATTTCCCCCTAGGATCACCCCCCT
AGGAATTATCAGGTTCATTTCTCATAACATAACAAATAACCAACGTTCGC
AACAGTAAAAAAATTATAACCCTAATACTCGGGTGGTGAAGAACTTCTTC
TTTCTTGTTTTTTAACCCCAATATAATATTTTTAATATAACACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_g14.g1 MSMg01no131_g14.g1 CHROMAT_FILE:
MSMg01no131_g14.g1 PHD_FILE: MSMg01no131_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:37 2005
         (146 letters)



>mm_chr2_168866369_168866910
          Length = 542

 Score =  209 bits (108), Expect = 6e-59
 Identities = 135/146 (92%), Gaps = 4/146 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagctagatatggcagcagaagtgtgctcgcctgggacacacaagccccacgttctgc 60
           ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 342 agaagctagatatggcaacagaagtgtgctcgcctgggatagacaagccccacgttctgc 283

                                                                       
Query: 61  cgggagggagcatcgtcctgctcggatgtgtactgtaaaaacagtaaccacatacacacg 120
           |||||||||||| |||||||| |||||||||||||| | |||||||||||||    ||||
Sbjct: 282 cgggagggagcaacgtcctgcacggatgtgtactgtgagaacagtaaccaca----cacg 227

                                     
Query: 121 tgagtcacggaagacccgtgggaaac 146
           ||||||||||||||||||||||||||
Sbjct: 226 tgagtcacggaagacccgtgggaaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 542
Length adjustment: 8
Effective length of query: 138
Effective length of database: 534
Effective search space:    73692
Effective search space used:    73692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)