BAC Information

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BAC

Clone NameMSMg01-131H08
Chromosome2 (Build37)
Map Location 89,365,477 - 89,365,902
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242
Downstream geneOlfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131H08.T7 (MSMg01no131_h08.b1)MSMg01-131H08.TJ (MSMg01no131_h08.g1)
ACCAG338955AG338956
length755711
length of high quality
(start - end)
---430 (66 - 495)
definitionCHROMAT_FILE: MSMg01no131_h08.b1 PHD_FILE: MSMg01no131_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:41 2005CHROMAT_FILE: MSMg01no131_h08.g1 PHD_FILE: MSMg01no131_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATCAAAATATCGCGGCGCTAAACGACTCACTAATTCAAAAGGAGGGGA
GGAATAGTATGTATTTTCTGAAAAAGGGGTAGATANTCTCTGAGAATTCA
AATTTTAATCTTAAAAATGAGTTAGCCCTAGAGAAAGTAAATATGTATTT
AATATAATCCCGTTGTTGACGTAAAATACTATACGCGACCGTCACACGCT
TAGCTCACCTCGACCTAATTTATACACAAATTCCATCTGTTTTATCTTCT
ACAACCCACGTAACAATCGATAGTTTTACTTTCAACCTCATATTTTTCAT
TATTCTATACTCGATCTATTTGGCCTTGTTCTTTTACTACGCAAACAACA
CCGAACGCAGCTTATCTGATAAGCTGTCCCACCTCTACCCCCTCTGAGAA
CAGACTCCACAAATAACGTACTACAACATAACCAAACCCATCCCCAAACC
ATAACCAATACGACAAAAGCCCCTTCGCCGTGCATTCCTCTCCTCTTTAA
TACAATTATCACATATACATCCTATCCAACCCACGCCCCTCCTATACCCT
CCCCACCTCACCATCAAAACTACCCCTTACACTACCTCTAAACTCTCATA
TACATCGCTAACACACTTCAACGCTACAATTATATTTTTCTATCGGCCCC
TCACTCTTTCGCCTTCTGCTCCATTACCATATCCCNTCACCATTCTCTCC
TCACCCTCCCCACTCCCTCACATATTCCCCTCCCCCATACACCTTCCTTC
CACTT
NTTCATGAAGTGGTAGCCTGGCGCCGCCTGTTTCTGACTGGGGGTGACCT
ATAGAATTTTCGCGAAATTCTTTTGTGTGACTAAGGGAGTTGTTGGTTAA
ACAGAAAGAAGAAGGCCTGTCAAGACGTTTGTGTACACAGTTTCTGTACA
ATGGGTTATAGAATTGCCTTGTTTAATATCATATATTTTTGATGTACCTC
CCGAGGCATATTTGTAATTTCATTTATGAAGTGATCCAGACCTATGTCTT
CTTATTGTGAATATTAACTATTCCTTTTATTATGCTGATCTTGGGTATTA
CATATTATTTGTATTTTATTCCTACCCAGGAAGAACTATATTTAAGAACA
CAATCAACTGTTCTCTACTGCAATTTTCAGCGTATATTTTCTCCATAATT
TGCAATCTATCCCTGTATAAAAGCTAAAGATTTTCTATCTTCTGAAAATT
ATTTGTGCAAATATTAGGACTTTACTAAATATCTGAACTTTGTATACAGG
ATTAATCAGTTAAGAAAATGCTATCTGCTTTTTTAGTGTATGGAGGTTTG
GTTCCTAACACATTTAGTGTTTGGATTACAGATGTCTAAATACAGTTTTC
GGGGGATCTGATGACCTTGAGTTTCTGCGGTCACTTGAATGTTCTTGTCC
ACTTTATTTTCAGTGAATCATATTTACTCTTTCTCATATTTTTTAAAATA
TACCTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_h08.g1 MSMg01no131_h08.g1 CHROMAT_FILE:
MSMg01no131_h08.g1 PHD_FILE: MSMg01no131_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:41 2005
         (430 letters)



>mm_chr2_89365277_89366105
          Length = 829

 Score =  772 bits (399), Expect = 0.0
 Identities = 420/427 (98%), Gaps = 1/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcttttgtgtgactaagggagttgttggttaaacagaaagaagaaggcctgtcaaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 626 aattcttttgtgtgactaagggagttgttggttaaacagaaagaagaatgtctgtcaaga 567

                                                                       
Query: 61  cgtttgtgtacacagtttctgtacaatgggttatagaattgccttgtttaatatcatata 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catttgtgtacacagtttctgtacaatgggttatagaattgccttgtttaatatcatata 507

                                                                       
Query: 121 tttttgatgtacctcccgaggcatatttgtaatttcatttatgaagtgatccagacctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttttgatgtacctcccgaggcatatttgtaatttcatttatgaagtgatccagacctat 447

                                                                       
Query: 181 gtcttcttattgtgaatattaactattccttttattatgctgatcttgggtattacatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtcttcttattgtgaatattaactattccttttattatgctgatcttgggtattacatat 387

                                                                       
Query: 241 tatttgtattttattcctacccaggaagaactatatttaagaacacaatcaactgttctc 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatttgtatttta-gcctacccaggaagaactatatttaagaacacaatcaactgttctc 328

                                                                       
Query: 301 tactgcaattttcagcgtatattttctccataatttgcaatctatccctgtataaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 tactgcaattttcagcgtatattttctccataatttgcaatctatccctgtctaaaagct 268

                                                                       
Query: 361 aaagattttctatcttctgaaaattatttgtgcaaatattaggactttactaaatatctg 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 267 aaagattttctatcttctgaaaattatttgtgtaaatattaggactttactaaatatctg 208

                  
Query: 421 aactttg 427
           |||||||
Sbjct: 207 aactttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space:   345220
Effective search space used:   345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)