BAC Information

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BAC

Clone NameMSMg01-131L21
Chromosome2 (Build37)
Map Location 11,296,638 - 11,296,920
singlet/doubletsinglet
Overlap genenone
Upstream geneSfmbt2, LOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733
Downstream geneLOC100040898, LOC667211, Pfkfb3, Rbm17, Il2ra, Il15ra, Fbxo18, Ankrd16, EG635919, LOC667247, Itga8, 2310047O13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L21.T7 (MSMg01no131_l21.b1)MSMg01-131L21.TJ (MSMg01no131_l21.g1)
ACCAG339164AG339165
length734720
length of high quality
(start - end)
---283 (81 - 363)
definitionCHROMAT_FILE: MSMg01no131_l21.b1 PHD_FILE: MSMg01no131_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:04 2005CHROMAT_FILE: MSMg01no131_l21.g1 PHD_FILE: MSMg01no131_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTAGCCCTTTCCCCTGAAGACTGATGGAGCAAGAGTTTAATG
CCTGTCGGGCGTGGTGGGCCATGTTTTCACTCCCAGCGCTCGGGAGGCAT
AGGCTGGCAGATTTCCGAGTTCAAGGCTAGCCTAGCTCTACAAAGTGAGT
TCCAGGGCAGCCAAGACTACACAGAGAAACCCTGTCTCGAAAAGCCTAAA
GATAGAAACTATATCACATTAAAGGTTAATGCCTGGACTGCAGATTCCTT
CTCCAAGAGACAAAGACGAGAGGGAGGCATTGATGTATCAAGGACATAGC
AGGGAAAAACACTTTGAGTTTTTTTTTTCTCCCCCCCCCCCTCGGTGACT
GACTCTCTTGCGCTACGAGCGATGCCCTGCTCTTCAAAAAAATAAGATTT
CACTTCGGGGCGACCACATGGAGCCTCACAATCCCGGTCTGATGCCTCTG
TAAACCTGCTGATTCCGAACTCACCCACAATGCCCTACATTTTATAAAAA
GTCGCGATTATGACTTTTTTCCATAGCGTTCCGCCCCACTTGATTTGTCT
CTCCTTTTTCCAGACTTTCTCCTTTTGAGTTGGATCCGTTTCAGTATTAT
CCTCTTGTACTGCTTGCACCCCTGGATCCTCCTTGATTTTCTTTTTGAAT
CTTCCTCTGGCGCTTATTTTTTCCCTGTTACGCC
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCAGAAATTCTTTGCCATTCTTGAGTACAGTTC
ATTAGGGAAGTGAGTCCTGATATCGCCCACAGCTAAAAGGGCAAAGCAGA
GTGGGTCCCCCAAAGCCCCCTAGCACACACACACACTCCACAAGAATCTC
ATGGAATTCATTGGTCATGAGGTGTTTTTTGTAGTTGGTGGTAACAGTGG
TTTTTGGGTTTAGCTTTGTTTGTTTTTGTTTCGTTTCTGCTTGCTTCATG
AGTCTCTTATGGGCAGGCACTGAAACCTTTTATTTGCATACAGCTCCCAG
AGCCAGGGTGAGCTGTATACACAGGCTGTCTGCCTTGGCAGAAGCAGGAA
GTCACTACAAGAAGCCATGCCTCTCTACCCTTAGAGGCCTTCTCTTCGTT
TATATGTGATTTTTCAAGAAAACCCAAGCTGACTTTTCGAACAGAACACA
TAAGCTTATAAGTGAGCCGGGCGTGGTGGCCCACTCCTTTAATCCCAGCA
CTTGGGAGGCAGAGGTATGAGGATTCCTGAGATCAAGGCCAGAATGGTCT
ATAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAATAACCCTGTCTCA
AAAAGCTAAAAACAAAACAAAACAAAATAAAATAACTACTACCACAACCA
CAAATACTAAATTTCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l21.g1 MSMg01no131_l21.g1 CHROMAT_FILE:
MSMg01no131_l21.g1 PHD_FILE: MSMg01no131_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:04 2005
         (283 letters)



>mm_chr2_11296438_11297120
          Length = 683

 Score =  501 bits (259), Expect = e-146
 Identities = 277/283 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccattcttgagtacagttcattagggaagtgagtcctgatatcgcccacagctaaaagg 60
           |||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 201 gccattcttgagtacagttcattagggaagtgagtcctgagagcgctcacagctaaaagg 260

                                                                       
Query: 61  gcaaagcagagtgggtcccccaaagccccctagcacacacacacactccacaagaatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaagcagagtgggtcccccaaagccccctagcacacacacacactccacaagaatctc 320

                                                                       
Query: 121 atggaattcattggtcatgaggtgttttttgtagttggtggtaacagtggtttttgggtt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggaattcattggtcatgaggcgttttttgtagttggtggtaacagtggtttttgggtt 380

                                                                       
Query: 181 tagctttgtttgtttttgtttcgtttctgcttgcttcatgagtctcttatgggcaggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctttgtttgtttttgtttcgtttctgcttgcttcatgagtctcttatgggcaggcac 440

                                                      
Query: 241 tgaaaccttttatttgcatacagctcccagagccagggtgagc 283
           |||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaaccacttatttgcatacagctcccagagccagggtgagc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)