Query= MSMg01no132_b08.b1 MSMg01no132_b08.b1 CHROMAT_FILE:
MSMg01no132_b08.b1 PHD_FILE: MSMg01no132_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:30 2005
(373 letters)
>mm_chr2_153454877_153455649
Length = 773
Score = 656 bits (339), Expect = 0.0
Identities = 359/373 (96%), Gaps = 12/373 (3%)
Strand = Plus / Minus
Query: 1 cccagcactggtgaggcagaggcaggcacatctctgtgagttcgaggccagactggtcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cccagcactggtgaggcagaggcaggcacatctctgtgagttcgaggccagactggtcta 482
Query: 61 catagcaagctttgggccactcagggctataaaatgagaccctatctcaaaaacaacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catagcaagctttgggccactcagggctataaaatgagaccctatctcaaaaacaacaac 422
Query: 121 aacagaaaaaatagagagaccctaactcaatgaggtagaagggaggaaccagcgcttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aacagaaaaaatagagagaccctaactcaatgaggtagaagggaggaaccagcgcttgaa 362
Query: 181 ggttgttctctgactaccccatacacccccaaattaagcaaacaaacaaacaaataaata 240
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 361 ggttgttctctgactaccccatacacccccaaattaa------------acaaataaata 314
Query: 241 aggggggaggggtgagcatggtcaagacgcactgtataaattctcaaaggattcttctct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggggggaggggtgggcatggtcaagacgcactgtataaattctcaaaggattcttctct 254
Query: 301 ctcaaaagcctatagctgggtgatatgtggcacactgggttaggtggagatattagatgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 253 ctcaaaagcctatagctgggtgatatgtggcacactgggttaggtggagatattggatgg 194
Query: 361 ggtaggcaccctg 373
|||||||||||||
Sbjct: 193 ggtaggcaccctg 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_b08.g1 MSMg01no132_b08.g1 CHROMAT_FILE:
MSMg01no132_b08.g1 PHD_FILE: MSMg01no132_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:30 2005
(529 letters)
>mm_chr2_153304562_153305490
Length = 929
Score = 948 bits (490), Expect = 0.0
Identities = 525/551 (95%), Gaps = 23/551 (4%)
Strand = Plus / Plus
Query: 2 aattctactgctgccagctgcaaactagagttaattttggtggcacagttgttacttctc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 aattctactgctgccagctgcaaactagagttaattttggtggcacagttgttacttctc 238
Query: 62 agctgacttgatgctctgcagagcaggcagtctctttgatgagttatctcccttctaaat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 agctgacttgatgctctgcagagcaggcagtctctttgatgagttatctcccttctaaat 298
Query: 122 tccctgtctgattgccttgctctggaggtcaaggacaagggcgaaccctgtgtctctggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tccctgtctgattgccttgctctggaggtcaaggacaagggcgaaccctgtgtctctggc 358
Query: 182 ---gagagccacggtggaggaagaagaccaggttggcccacgttagagatgagcactaga 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgggagagccacggtggaggaagaagaccaggttggcccacgttagagatgagcactaga 418
Query: 239 gcgtggagggctttctgctacgtaagcatgcatcttcatcctagcctagagctctaggag 298
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gcgtggagggctttctgctaggtaagcatgcatcttcatcctagcctagagctctaggag 478
Query: 299 tcctttcagaggatgccaagttggg--------------------cagagccagagctgg 338
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 479 tcctttcagaggatgccaagttgggaatagtgagtctgttgcaggcagagccagagctgg 538
Query: 339 ggctgactggccaaatgatggggtcccagactcccctgagatattatatttattatataa 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ggctgactggccaaatgatggggtcccagactcccctgagatattatatttattatataa 598
Query: 399 agttaggcctcagaagagctgagtggttatggggatgagagatgcagtcggctaaaagga 458
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agttgggcctcagaagagctgagtggttatggggatgagagatgcagtcggctaaaagga 658
Query: 459 aagtgaggttcatgccagaggaataaggttgcttcctcacctgcactgganaggcacaga 518
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 659 aagtgaggttcatgccagaggaataaggttgcttcctcacctgcactggaaaggcacaga 718
Query: 519 ctcaagaacag 529
|||||||||||
Sbjct: 719 ctcaagaacag 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
