BAC Information

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BAC

Clone NameMSMg01-132D23
Chromosome2 (Build37)
Map Location 77,324,369 - 77,324,715
singlet/doubletsinglet
Overlap geneZfp533
Upstream geneOsbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn, 2610301F02Rik, Sestd1, LOC623706, LOC667906
Downstream geneBC003993, LOC667920, OTTMUSG00000016703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132D23.T7 (MSMg01no132_d23.b1)MSMg01-132D23.TJ (MSMg01no132_d23.g1)
ACCAG339541AG339542
length705705
length of high quality
(start - end)
643 (43 - 685)598 (68 - 665)
definitionCHROMAT_FILE: MSMg01no132_d23.b1 PHD_FILE: MSMg01no132_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:42 2005CHROMAT_FILE: MSMg01no132_d23.g1 PHD_FILE: MSMg01no132_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGACCGCGGAATTC
ATGAATTGGTTAATCTTCAAAACTTTCAAAGTGAGTTCAGATCAATATTG
TTGAGCCTTAAGTATGGCGAGTTACATTTAAAAGCATTGTCCTGAGGACT
CGGCAAGAACGTTGACCCTGAGAAAGCCAGAGCCGGTTTGCAGGCAATGC
AGTGGGGATCGGGCTTCCACTCCCGCGCAATCATGTCTATTATGTCCTAC
AATGGAGGGGCCGTCATGACCATGAAGGGAAAGAACTGTGTGGCCATCGC
TGCAGACAGGCGTTTTGGGATCCAGGCCCAGATGGTGACCACGGACTTCC
AGAAGATATTTCCCATGGGTGACAGGCTCTACATAGGCTGGCCAGCCTGG
CCACTGACGTCCAGACAGTTGCCCAGCCTCTCAAGTTCCAACTGAACCTG
TATGAGCTGAAAGAAGGTCGGCAGATCAAGCCTTACACCCTCATGAGCAT
GGGTAGCCAACCTCCTGTATGAGAAGCGGTTTGGTACCTACTACACAGAG
CCTGTCACTGCTGGCCTGGACCCAAAGACTTTTAAGCCCTTCCTTTGCTC
TCTGGACCTCATTGACTGTCCCATGGTGACTGATGACTTCGTAGTCAGTG
GTACCTGCTCTGAACAATGTATGGGATGTGTTAGTCTCTCTGGGAGCCCA
ACATG
TGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTATTTTTAAATAATATTCCTCAGACTTATTTTG
GGGTGTTGAATTGTCTGTTATGGAAATTAATAGGTATATTTGGGAGCTGC
TTTCAAGTGTTGATTTTTGAAAGAAAAGCCCAACCTTCTTTGAGCCTGGT
GGATGGCTCAGCAAGATGCAAGCACAAGGCCCTGAGTGATTTCTGTCTTC
CTGCACCCACCTAAAGGACCAGGAATAGCTGTGTATGTGCCTGTGACCCC
AGTGGGGGGGCCTGAAAACAGGTGGATCTTGGGAGTTCAGTGGCCAGCCA
AACTAGTGATAATCGAGCATCTGATTCGGTAAAGAAACCTTTACTGTCTT
GAGGAAATAACAGGCCATCAGGGCAGAGCAGCGCACTTGATGTTCTATAT
GCGCGCGCGCACACACACACACACACACACACACACACACACACACACAA
AGGGGGCAAGGTAGAGGGACAGAAAAGGAGGGAGGGAGGGAGAGAGAGAA
TAAAAGCCAATTTTCAAGATTATCTTCTATCTAGCCTGTCTTGCAAACAT
TAGGATGGCTCTCCTTAAATATGCTACAGAACAATCACTCTCATAACCTG
CCCTCAAATGAAAAGTTTCTTTAGTCTGAGTTCCTGAAATTATATATATT
GTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_d23.g1 MSMg01no132_d23.g1 CHROMAT_FILE:
MSMg01no132_d23.g1 PHD_FILE: MSMg01no132_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:42 2005
         (598 letters)



>mm_chr2_77324366_77325363
          Length = 998

 Score =  648 bits (335), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttttaaataatattcctcagacttattttggggtgttgaattgtctgttatggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatttttaaataatattcctcagacttattttggggtgttgaattgtctgttatggaaat 291

                                                                       
Query: 61  taataggtatatttgggagctgctttcaagtgttgatttttgaaagaaaagcccaacctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 taataggtatatttgggagctgctttcaagtgttgatttttgaaagaaaagcccaacctt 231

                                                                       
Query: 121 ctttgagcctggtggatggctcagcaagatgcaagcacaaggccctgagtgatttctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 230 ctttgagcctggtggatggctcagcaagatgcaagcacaaggccctgagtgatctctgtc 171

                                                                       
Query: 181 ttcctgcacccacctaaaggaccaggaatagctgtgtatgtgcctgtgaccccagtgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 170 ttcctgcacccacctaaaggaccaggaatagctgtgtatgtgcctgtgaccccagtgtgg 111

                                                                       
Query: 241 gggcctgaaaacaggtggatcttgggagttcagtggccagccaaactagtgataatcgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gggcctgaaaacaggtggatcttgggagttcagtggccagccaaactagtgataatcgag 51

                                                          
Query: 301 catctgattcggtaaagaaacctttactgtcttgaggaaataacagg 347
           |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 50  catctgattcggtaaagaaacctttactttcttgaggaaataacagg 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)