Query= MSMg01no132_f07.b1 MSMg01no132_f07.b1 CHROMAT_FILE:
MSMg01no132_f07.b1 PHD_FILE: MSMg01no132_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:49 2005
(533 letters)
>mm_chr2_33969690_33970622
Length = 933
Score = 971 bits (502), Expect = 0.0
Identities = 520/526 (98%)
Strand = Plus / Minus
Query: 7 ggaattcatgtatggtgccgcgtggcacacatctggcagggtacgtggtagctatggggt 66
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ggaattcatgtatgggggggcgtggcacacatctggcagggtacgtggtagctatggggt 673
Query: 67 gtagaaagagtcctgaggacatcccctgtagaatagggaccatggtgacttagaggaagg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtagaaagagtcctgaggacatcccctgtagaatagggaccatggtgacttagaggaagg 613
Query: 127 tctgaagctgtgggagaggaacgagggccttctggagtagaagagtgtgcaccttactgc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tctgaagctgtgggagaggaacgagggccttctggagtagaagagtgtgcaccttactgc 553
Query: 187 agttcaggttccaagcctgaggtgtagtgtttccttgttggctcctcatggctgctccta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agttcaggttccaagcctgaggtgtagtgtttccttgttggctcctcatggctgctccta 493
Query: 247 cattataggcaaaaagggaggctcataggggctagcatcctgcaaaacaggagccccaac 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 492 cattataggcaaaaagggaggctcatgggggctagcatcctgcaaaacaggagccccaac 433
Query: 307 ctcaattagaccagcatggctactccccagctccagagctggaccacaactccccgctga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctcaattagaccagcatggctactccccagctccagagctggaccacaactccccgctga 373
Query: 367 agatggaaaatgaaacgtgatcctcctccggttctggtacctggagggggcagggactgg 426
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agatggaaaatgaaatgtgatcctcctccggttctggtacctggagggggcagggactgg 313
Query: 427 gaatggctcctacacagtgggctggagtgtggagctgggagtggccccttcacagtgggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaatggctcctacacagtgggctggagtgtggagctgggagtggccccttcacagtgggc 253
Query: 487 tagagtcaggggtcagtcttagaagcagcaagaagttttcattgcc 532
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tggagtcaggggtcagtcttagaagcagcaagaagttttcattgcc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_f07.g1 MSMg01no132_f07.g1 CHROMAT_FILE:
MSMg01no132_f07.g1 PHD_FILE: MSMg01no132_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:49 2005
(585 letters)
>mm_chr2_33897143_33898127
Length = 985
Score = 1112 bits (575), Expect = 0.0
Identities = 585/593 (98%), Gaps = 8/593 (1%)
Strand = Plus / Plus
Query: 1 tcctttcaggctctgggcttcccgaggggcaggctgtcctttgctggcaagagtgctact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tcctttcaggctctgggcttcccgaggggcaggctgtcctttgctggcaagagtgctact 252
Query: 61 caagagtgaggctgccgcttcagactactcactgcggactgcacctacaaccctcagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 caagagtgaggctgccgcttcagactactcactgcggactgcacctacaaccctcagtcc 312
Query: 121 acacctaggcaaccagaggtcagatatgtccctcctctaaatgcaaactagaatgatgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 acacctaggcaaccagaggtcagatatgtccctcctctaaatgcaaactagaatgatgac 372
Query: 181 cagccaggtagttggtgtgattcccccaagtcatccatgctgtccatgggggtacacggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cagccaggtagttggtgtgattcccccaagtcatccatgctgtccatgggggtacacggt 432
Query: 241 gggaggagggtatgttctgcaaacatttcggaagactgaggcatactttgctccagtgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gggaggagggtatgttctgcaaacatttcggaagactgaggcatactttgctccagtgac 492
Query: 301 ccaccacaaccctccgctttacctctcctggcttcctgcctcgcatcacaaacccgctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaccacaaccctccgctttacctctcctggcttcctgcctcgcatcacaaacccgctgg 552
Query: 361 tgttcccctggctactccttcccacttcctgggtttgcaacagacaatgg--------ct 412
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 553 tgttcccctggctactccttcccacttcctgggtttgcaacagacaatgggttcccagct 612
Query: 413 gcgaaactttctccgagcctctaattacaggggaccagaaggcaggtgagctgtcttctc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gcgaaactttctccgagcctctaattacaggggaccagaaggcaggtgagctgtcttctc 672
Query: 473 tgtggacctctgattggttgatccataaccaatggcatacacagatgactgatacctact 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgtggacctctgattggttgatccataaccaatggcatacacagatgactgatacctact 732
Query: 533 ctctattccctgcagatcatcacgatgcctcaaagactgtaaaagaatgcatt 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ctctattccctgcagatcatcacgatgcctcaaagactgtaaaagaatgcatt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
