BAC Information

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BAC

Clone NameMSMg01-132F13
Chromosome2 (Build37)
Map Location 113,165,832 - 113,166,308
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3, 4930563P21Rik
Downstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132F13.T7 (MSMg01no132_f13.b1)MSMg01-132F13.TJ (MSMg01no132_f13.g1)
ACCAG339615AG339616
length696692
length of high quality
(start - end)
629 (66 - 694)506 (69 - 574)
definitionCHROMAT_FILE: MSMg01no132_f13.b1 PHD_FILE: MSMg01no132_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:50 2005CHROMAT_FILE: MSMg01no132_f13.g1 PHD_FILE: MSMg01no132_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATGCGCGGAATT
CTCACCTGTACCAAACCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGTTGGGAGT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
CTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTACCACATTCACAAAGAAAC
TCACACTATATGTATTCACTGATAAGTGGATATTACCCCCAAACCTAGGA
TACCCAAGATATAAGATATAATTTGCTAACCACATGAAACTCATGA
AATGAAGTGCGAGGCCTGGCGGCGCCTGTTCAAAAATTGAGGTGACCTAT
AGAAGTATCAGCGAAAGTCTTTAAAGCACTCTGTCAAATAATGTCTTGGC
TCTGAGAACTGAGTCCTATGAAGAATTTTTTTTTTAATAAGAGAGCTTTA
ATAATCCAAAGTCTTCAAACAGTATTGTTTTAACAAAGTTCTAAAGAGAT
TTCTAAATTCTGTTCTGACCTTTCTTCAACTCCACAAAAGCTGTTCTTGC
CTAAGGAAGGCAGGAAGAGGGAGAAGGGAGAAGGTGGTTTCTCAGTTGTC
TGTTACTATGACTAATTATCAGAGAGAAAAATCTCAGTGGTGACAGGGCT
AGAGAGATTACTCAACAGCTAAAAGCACTCTGTGCTCTTCTTGCAGAGGA
CCAGGGCTCACCTCCTAGTGCAACCCCCACACAACTCCAGTTCTTGGCTT
TCTACCACCCTCTTCTGTCCTCTACCGGTACTGCATGCACATGGTGTGCA
TAACATACATGCAGGTAAAGCACTCTTACACGGAAAGGAATACATTTTAA
AAAATATTAAGAGTAAAGGAAGAGGAAAGCACACAGTGTGCCCTCATGAT
CCTTTTATTACCACCAACTGCAGGCAAAACTGCCCACAGGTCACAATGGG
TTAATTCCCCTTGGGAAAAATACCACCATCTTTCTACAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_f13.g1 MSMg01no132_f13.g1 CHROMAT_FILE:
MSMg01no132_f13.g1 PHD_FILE: MSMg01no132_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:50 2005
         (506 letters)



>mm_chr2_113165832_113166737
          Length = 906

 Score =  847 bits (438), Expect = 0.0
 Identities = 468/478 (97%), Gaps = 2/478 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaaagcactctgtc-aaataatgtcttggctctgagaactgagtcctatgaagaatt 59
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 477 ctttaaagcactctgtcaaaataatgtcttggctctgagaactgagtcctatgaagaa-t 419

                                                                       
Query: 60  ttttttttaataagagagctttaataatccaaagtcttcaaacagtattgttttaacaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttttttttaataagagagctttaataatccaaagtcttcaaacagtattgttttaacaaa 359

                                                                       
Query: 120 gttctaaagagatttctaaattctgttctgacctttcttcaactccacaaaagctgttct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gttctaaagagatttctaaattctgttctgacctttcttcaactccacaaaagctgttct 299

                                                                       
Query: 180 tgcctaaggaaggcaggaagagggagaagggagaaggtggtttctcagttgtctgttact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgcctaaggaaggcaggaagagggagaagggagaaggtggtttctcagttgtctgttact 239

                                                                       
Query: 240 atgactaattatcagagagaaaaatctcagtggtgacagggctagagagattactcaaca 299
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atgacaaaatatcagagagaaaaatctcagtggtgacagggctagagagattactcaaca 179

                                                                       
Query: 300 gctaaaagcactctgtgctcttcttgcagaggaccagggctcacctcctagtgcaacccc 359
           | ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 178 gttaagagcactctgtgctcttcttgcagaggaccagggctcagttcctagtgcaacccc 119

                                                                       
Query: 360 cacacaactccagttcttggctttctaccaccctcttctgtcctctaccggtactgcatg 419
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 118 cacacaactccagttcttagctttctaccaccctcttctgtcctctaccggtactgcata 59

                                                                     
Query: 420 cacatggtgtgcataacatacatgcaggtaaagcactcttacacggaaaggaatacat 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cacatggtgtgcataacatacatgcaggtaaagcactcttacacggaaaggaatacat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)