Query= MSMg01no132_f21.b1 MSMg01no132_f21.b1 CHROMAT_FILE:
MSMg01no132_f21.b1 PHD_FILE: MSMg01no132_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:52 2005
(662 letters)
>mm_chr2_49868170_49869234
Length = 1065
Score = 1210 bits (626), Expect = 0.0
Identities = 652/662 (98%), Gaps = 3/662 (0%)
Strand = Plus / Minus
Query: 4 gaattcctgagcttacctcaggagttttcccacccactctctccacgccagctggaaata 63
||||||||||||| || || || |||||||||||||||||||||||||||||||||||||
Sbjct: 865 gaattcctgagctgacatctggtgttttcccacccactctctccacgccagctggaaata 806
Query: 64 ggttcctcacttcaaggaacaagcgtgaagcctagaatacatttgactgtgtgtttgaaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggttcctcacttcaaggaacaagcgtgaagcctagaatacatttgactgtgtgtttgaaa 746
Query: 124 cagtcttcccttcaatagtccagcagtttactctgtgggtgcctccctgccatttgcaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagtcttcccttcaatagtccagcagtttactctgtgggtgcctccctgccatttgcaca 686
Query: 184 tcaggagctccaggctgggatgtctgtctgcttgctgcctcatctcagatcagcagtaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcaggagctccaggctgggatgtctgtctgcttgctgcctcatctcagatcagcagtaca 626
Query: 244 gggaagagtggggtgaggagacaacgtggctgcagtagtttaatatgatgttctgtataa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 gggaagagtggggtgaggagacaacgtggctgcagtagtttaatatgatgttctgtacaa 566
Query: 304 gatcatgataacaacagtccttaggattatcttgcgccacacaataacatagcactgggg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatcatgataacaacagtccttaggattatcttgcgccacacaataacatagcactgggg 506
Query: 364 ccaagactttgattagatacagcagtccatcaggtgaagggaaactggttttgaacctac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaagactttgattagatacagcagtccatcaggtgaagggaaactggttttgaacctac 446
Query: 424 tttctggtgtagccagaaaggcatatgcacattctagagcctgtatttaagtagctgtgt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttctggtgtagccagaaaggcatatgcacattctagagcctgtatttaagtagctgtgt 386
Query: 484 tggtatgtcctaataaagacagtgtatccagcacagctgctgtgattaacgctgatattt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggtatgtcctaataaagacagtgtatccagcacagctgctgtgattaacgctgatattt 326
Query: 544 gtgtgggtttatggttgtccactgtaatttgccacaatcaacctcattcccccccc---a 600
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 325 gtgtgggtttatggttgtccactgtaatttgccacaatcaacctcatcccccccccccca 266
Query: 601 acaacaaggttgttgtgttaaacacataaaccagtgtagaaagcacaagggtaccctgat 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaacaaggttgctgtgttaaacacataaaccagtgtagaaagcacaagggtaccctgat 206
Query: 661 tc 662
||
Sbjct: 205 tc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1065
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1055
Effective search space: 687860
Effective search space used: 687860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_f21.g1 MSMg01no132_f21.g1 CHROMAT_FILE:
MSMg01no132_f21.g1 PHD_FILE: MSMg01no132_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:52 2005
(287 letters)
>mm_chr2_49729889_49730575
Length = 687
Score = 536 bits (277), Expect = e-157
Identities = 285/289 (98%), Gaps = 4/289 (1%)
Strand = Plus / Plus
Query: 1 caggccagccaggaatttatagtgagaccttgtctaaaataaataagtacca--cagtaa 58
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 201 caggccagccaggaatttatagtgagaccttgtctaaaataaataagta--agtcagtaa 258
Query: 59 gccatggctcaattaccaacatttctgtgaacagatatttggattatgtctatttgtcca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gccatggctcaattaccaacatttctgtgaacagatatttggattatgtctatttgtcca 318
Query: 119 tatagaacacaaaattcccctatatctttattctttactagactttataaagaaatgttt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tatagaacacaaaattcccctatatctttattctttactagactttataaagaaatgttt 378
Query: 179 cattattttgttaaaatatggctaggcgtggcctggctaagacaaaggaatgcacattta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattattttgttaaaatatggctaggcgtggcctggctaagacaaaggaatgcacattta 438
Query: 239 aatttcaaaaactcttttgggcccactgtcctgtttaacctcatcttgg 287
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatttcaaaaactcttttgggcccactgtcctgtttaacctcatcttgg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
