Query= MSMg01no134_a04.b1 MSMg01no134_a04.b1 CHROMAT_FILE:
MSMg01no134_a04.b1 PHD_FILE: MSMg01no134_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:59 2005
(586 letters)
>mm_chr2_132367090_132368074
Length = 985
Score = 1017 bits (526), Expect = 0.0
Identities = 571/592 (96%), Gaps = 13/592 (2%)
Strand = Plus / Minus
Query: 1 ttcttaagcctttata-tattcagagataggcctgatggagtgctttcctggagtcgggc 59
|||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 785 ttcttaagcctttatagtattcagagataggtttgatggagtgatttcctggagtcgggc 726
Query: 60 agcagtgccactggattttctttttgatgttactggtgaatggacatgtcaagtattttc 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 725 agcagtgccactggattttctttttgatgttactgatgaatggacatgtcaagtattttc 666
Query: 120 tgtattggtcccttgctacagtattgaggcagaagaggaaggtcatttccccatgactcc 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgtattggtcccttggtacagtattgaggcagaagaggaaggtcatttccccatgactcc 606
Query: 180 catctatttctgcttcatatcttaaattaatcagctggcacagctggggtggagtgctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 catctatttctgcttcatatcttaaattaatcagctggcacagctggggtggagtgctgt 546
Query: 240 ggcatcagtatgcagaggcctttcagtcaaggtaggctagatggaagatacaggaatctg 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 545 ggcatcagtatgcagaggcctttcagtcaaggcaggctagatggaagatacaggaatttg 486
Query: 300 aggactacagagcagtgttttt-----cagctgcagtagaaccagtaaggagaggggagc 354
||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 485 aggactacagagcagtg-----agacacagctgcagtagaaccagtaaggagaggggagc 431
Query: 355 atgtgatgatacagggaagagtcgcgtgtggggtcctgaagattcactgctactgttctt 414
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 430 atgtgatgatacagggaagagtcgcgtgtggggtcctgaagattcactgctgctgttctt 371
Query: 415 gtgctcgtcagtgctggcgagcacgtacacaaaactggtattttctaagggacttaaact 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgctcgtcagtgctggcgagcacgtacacaaaactggtattttctaagggacttaaact 311
Query: 475 aggttcaacttggatttttttttttaaattgaatatcattttcagtgatctggtttaaag 534
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 310 aggttcaacttggatttttttttt--aattgaatatcattttcagtgatctggtttaaag 253
Query: 535 ttagccagtttgctgctattggacaatagaatctgacaggatagctggctct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttagccagtttgctgctattggacaatagaatctgacaggatagctggctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_a04.g1 MSMg01no134_a04.g1 CHROMAT_FILE:
MSMg01no134_a04.g1 PHD_FILE: MSMg01no134_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:00 2005
(726 letters)
>mm_chr2_132206349_132207474
Length = 1126
Score = 1365 bits (706), Expect = 0.0
Identities = 721/726 (99%)
Strand = Plus / Plus
Query: 1 acaggaagcttgctaagcaatggaacgccttgtatttggatctggctgccatgaaaaact 60
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 201 acaggaagcttgctaagcaatggaacgctttgtatttggatctggctgcaatgaaaaact 260
Query: 61 tggtacctattgtgctgattagaagctgctctggttaactctcctaatggcttttaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtacctattgtgctgattagaagctgctctggttaactctcctaatggcttttaaata 320
Query: 121 gttgctgcctgagttttctgctttttgtctctatgttgtagggcacgggctacctgtatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgctgcctgagttttctgctttttgtctctatgttgtagggcacgggctacctgtatc 380
Query: 181 cgaattggagacagtgtctcagagcatgaccagaactatgagactcagaggcttccaacg 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgagttggagacagtgtctcagagcatgaccagaactatgagactcagaggcttccaacg 440
Query: 241 tccccaaatgccggtgaacagaacacatctggagaatgtctcctctagtcccttgacaaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccaaatgctggtgaacagaacacatctggagaatgtctcctctagtcccttgacaaa 500
Query: 301 tcactgagctgtcacatctggagccacaccagtctgtgagaactgaagttgaacctcacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcactgagctgtcacatctggagccacaccagtctgtgagaactgaagttgaacctcacc 560
Query: 361 tgtcaatagcgatggccagcagagcgttggtggagacgtacagggagaccgtacgaaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcaatagcgatggccagcagagcgttggtggagacgtacagggagaccgtacgaaggt 620
Query: 421 agttgacggaggcacaaagcacgtgaccatgcgcccaggaaagctgccgtactacataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttgacggaggcacaaagcacgtgaccatgcgcccaggaaagctgccgtactacataat 680
Query: 481 agtccatctcaaaggggcagcagacgatcgccaccaggaagtcagagatggccaggttag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtccatctcaaaggggcagcagacgatcgccaccaggaagtcagagatggccaggttag 740
Query: 541 caatgaggaggttggtaaggttgcgcagcttcttgtagcgggcaagggcagcaatgaaga 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 caatgaggaggttggtaaggttgcgcagcttcttgtagcgggcgagggcagcaatgaaga 800
Query: 601 caaagttgccaatgccgcagaccagcatgatgcctgccagtgccacgccaatgacaattt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caaagttgccaatgccgcagaccagcatgatgcctgccagtgccacgccaatgacaattt 860
Query: 661 tggctgcaaagaaggtctgtgtcttggtcacatcctcatcctcacccagggggaggtcat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tggctgcaaagaaggtctgtgtcttggtcacatcctcatcctcacccagggggaggtcat 920
Query: 721 aatcac 726
||||||
Sbjct: 921 aatcac 926
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 726
Length of database: 1126
Length adjustment: 10
Effective length of query: 716
Effective length of database: 1116
Effective search space: 799056
Effective search space used: 799056
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
