Query= MSMg01no134_a23.b1 MSMg01no134_a23.b1 CHROMAT_FILE:
MSMg01no134_a23.b1 PHD_FILE: MSMg01no134_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:05 2005
(303 letters)
>mm_chr2_10045453_10046155
Length = 703
Score = 532 bits (275), Expect = e-155
Identities = 296/303 (97%)
Strand = Plus / Plus
Query: 1 tctagagacaatcttccataacaatgcatttgggaccttgattaaggtagaaaaatattc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagagacaatcttccataacaatgcatttgggaccttgattaaggtagaaaaatattt 260
Query: 61 cctcagatcctaaggtcttcatagcccgttgcatcttgtctggtctaaaaattcaaccca 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctgatcctaaggtcttcatagcccgttgcatcttgtctggtctaaaaattcaaccca 320
Query: 121 agtaaaagcagaccaaaataaacatacgtttcctggtgttgccatttgctacattagttt 180
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 321 agtaaaagcagaccaaaataaacatacgtttcctggtgttgtcattggctacattagttt 380
Query: 181 gccaatggataagaagggggcgggggaagaaagtgaatgaagagaaaccgaacccaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaatggataagaagggggcgggggaagaaagtgaatgaagagaaaccgaacccaaaag 440
Query: 241 tatctagaataaatggacatgctcaatacactacacttcacacacacacacacacacaca 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tatctagaataaatggacatgctcaatacactacactacacacacacacacacacacaca 500
Query: 301 cac 303
|||
Sbjct: 501 cac 503
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_a23.g1 MSMg01no134_a23.g1 CHROMAT_FILE:
MSMg01no134_a23.g1 PHD_FILE: MSMg01no134_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:06 2005
(768 letters)
>mm_chr2_10165894_10167062
Length = 1169
Score = 1317 bits (681), Expect = 0.0
Identities = 747/771 (96%), Gaps = 5/771 (0%)
Strand = Plus / Minus
Query: 1 aggtaagatgatataaaaagagaaaggagatttttgatgaattttcaatgactactgagt 60
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||
Sbjct: 995 aggtaagatgatataaaaagagagaggagattttcgatgaatttccaatgactactgagt 936
Query: 61 ttgacttcccatgggggcacccataccaatttctttgtccattaacatctaatcaaggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ttgacttcccatgggggcacccataccaatttctttgtccattaacatctaatcaaggga 876
Query: 121 caaagacaccgagctggaaaaatggctcagtagctaagagcactggctcttttctcccct 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 caaagacaccaagctggaaaaatggctcagtagctaagagcactggctcttttctcccct 816
Query: 181 cgagaacctaacttcagtttctagtacctacatggaagttcacaaccatccataactctt 240
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 815 cgagaacctaacttcagtttccagtacctacatggaagctcacaaccatccataactctt 756
Query: 241 gttgcagggaatctgaccccctcctctggtatctttgggcattgcatgtaactgttacac 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 755 gttgcagggaatctgaccccctcctctggtatctttgggcactgcatgtaactgttacac 696
Query: 301 agaagtacatgcaggtagaacccttaagctcataaaataagaataaataaatcttttttt 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 695 agaagtacatgcaggtagaacccttaagctcataaaataagaatacataaatc--ttttt 638
Query: 361 ---aaaaatgaataactttccttgtctatggtaacaatcacacggaaaatactctttctc 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aaaaaaaatgaataactttccttgtctatggtaacaatcacacggaaaatactctttctc 578
Query: 418 caacatagtctgatgcgtccaaccctcatcccgaggatatagctatgaaccagctcaaca 477
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 577 caacatagtctgatgcgtccaaccctcatcccgaggatatagttatgaaccagctcaaca 518
Query: 478 caaagtttgaacttacttaaatccttatggattttttgaatgagcatatgtatgtgtatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 caaagtttgaacttacttaaatccttatggattttttgaatgagcatatgtatgtgtatg 458
Query: 538 tgtgggagtgtgtattttcacacgtggcacaagcacttgtgcctttgcacatgccaaagg 597
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 457 tgtgggagtgtgtattttcacatgtggcacaagcacttgtgcctttgtacatgccaaagg 398
Query: 598 aaggcatgaggtatccctctatatcactctctggcttattcactaaatctagaactgggc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaggcatgaggtatccctctatatcactctctggcttattcactaaatctagaactgggc 338
Query: 658 tgccagccagcaatctccacgacactgagttacaggcatgcacgtatcatctcactgctg 717
| ||||||||||||| |||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 337 ttccagccagcaatccccacgacactaacttacaggcatgcacgtggcatctcactgctg 278
Query: 718 ggatttgaactcaggtcctcatgcttatgcaacaagatctctcactaagcc 768
||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 277 ggatttgaactcaggccctcatgcttatgcaacaagagctctcactaagcc 227
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1169
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1159
Effective search space: 878522
Effective search space used: 878522
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
