Query= MSMg01no134_i20.b1 MSMg01no134_i20.b1 CHROMAT_FILE:
MSMg01no134_i20.b1 PHD_FILE: MSMg01no134_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:04 2005
(729 letters)
>mm_chr2_181142561_181143689
Length = 1129
Score = 1326 bits (686), Expect = 0.0
Identities = 719/730 (98%), Gaps = 2/730 (0%)
Strand = Plus / Plus
Query: 1 taggcacctatgccccatgtcctgtaccacaaaccacatcaaggagctaaattgtcacct 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcacctatgcttcatgtcctgtaccacaaaccacatcaaggagctaaattgtcacct 260
Query: 61 ttctccaacaaccttccacattcaccaggacttatgtccttcaggtcctacagtgtaagt 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttctccaacaaccttccacattcaccaggacttgtgtccttcaggtcctacagtgtaagt 320
Query: 121 ctcagccccgcctggacaaagcttgccgccagcaacttatgtggtagttctgaatcccaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagccccgcctggacaaagcttgccgccagcaacttatgtggtagttctgaatcccaa 380
Query: 181 tagaaaatcaagtccagccagacacaacacagtcagactcctgactccctggtcacaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaaatcaagtccagccagacacaacacagtcagactcctgactccctggtcacaagg 440
Query: 241 gtaatctttcccaggtgcctccctggaactcatcagagctgaattcacgggcccc-tgag 299
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 441 gtaatctttcccaggtgcctccctggaactcatcagagctgaag-cacgggccccctgag 499
Query: 300 ttcccccaatgaagggaatcgaaacatatccaaccgaacactaggtatttcttttcaaac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcccccaatgaagggaatcgaaacatatccaaccgaacactaggtatttcttttcaaac 559
Query: 360 atatttgacattcctgagtatacatccctataaaggaggcttcagacccttcaagacatc 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atatttgacattcctgggtatacatccctataaaggaggcttcagacccttcaagacatc 619
Query: 420 tgcagctcaaaggatacattcatttctagaactggaaggtgaactgggtgcttagtcaga 479
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcagctcaaaggatgcatttatttctagaactggaaggtgaactgggtgcttagtcaga 679
Query: 480 gtacacaagcaggaatagggctccccttctacccaagttagtcactcacctctcccaaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtacacaagcaggaatagggctccccttctacccaagttagtcactcacctctcccaaac 739
Query: 540 tcataacaacccagccctagtgacagtgaaacaaagcacactgtccagccaaccacgtaa 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcataacaacccagccctaatgacagtgaaacaaagcacactgtccagccaaccacgtaa 799
Query: 600 gttctgaaagtctgcaaagcgatggagaatagcgccggatccttttcttttggtgtccaa 659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 800 gttctgaaagtctgcaaagcgatggagaaaagcgccggatccttttcttttggtgtccaa 859
Query: 660 agcaacagatgacttcgtagacacatggacctcgatcatattctactgacagtccttgct 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 agcaacagatgacttcgtagacacatggacctcgatcatattctactgacagtccttgct 919
Query: 720 tctgtcctac 729
||||||||||
Sbjct: 920 tctgtcctac 929
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space: 804561
Effective search space used: 804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_i20.g1 MSMg01no134_i20.g1 CHROMAT_FILE:
MSMg01no134_i20.g1 PHD_FILE: MSMg01no134_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:04 2005
(593 letters)
>mm_chr2_181290282_181291274
Length = 993
Score = 1017 bits (526), Expect = 0.0
Identities = 575/602 (95%), Gaps = 20/602 (3%)
Strand = Plus / Minus
Query: 1 acttttcagagggtatataaatgctagggcccccat----agatggagagttgttggccg 56
||||||||||||||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 861 acttttcagagggtatataaatgctagggcc----tggagagatggagagttgttggttg 806
Query: 57 caaaaccatgcttctgctagagcacgaggcaaatcacaggcagctgctgtggacagtctg 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caaaaccatgcttctgctagagcacgaggcaaatcacaggcagctgctgtggacagtctg 746
Query: 117 aggcagccccatgtcccacacctgggactaaaatggacacgttcttgtaatttatggttc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggcagccccatgtcccacacctgggactaaaatggacacgttcttgtaatttatggttc 686
Query: 177 tgttttcatggatccaacactagcaaggcactaagaagagaacaagtagatagacatact 236
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtttttatggatccaacactagcaaggcactaagaagagaacaagtagatagacatact 626
Query: 237 aggggccaccagagggagaatacaaactgggcttcattatttcattttatttctttatgg 296
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggggccaccag-------atacaaactgggcttcattatttcattttatttctttatgg 573
Query: 297 gaaatctgaaccaaactgcttagttttcagtctgaaggggaagttctaaggtgtttattc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gaaatctgaaccaaactgcttagttttcagtctgaaggggaagttctaaggtgtttattc 513
Query: 357 ttaatactctttagatgtttttcaccagccaaaacatttggtttttgaagccttgag--- 413
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ttaatactcttaagatgtttttcaccagccaaaacatttggtttttgaagccttgagggt 453
Query: 414 --ttttttttattgtttttaatcatgtgtatatgtatctacatgtgggtataatatggac 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttttttttttattgtttttaatcatgtgtatatgtatctacatgtgggtataatatggac 393
Query: 472 atgaacataggtgcctgcagaggccagaggtgttagatcgctgtaattacagttgtgagc 531
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgaacgtaggtgcctgcagaggccagaggtgttagatcgctgtaattacagttgtgagc 333
Query: 532 ttcctgatgtgggacctgaaatccaatcctctggaagagcaccaagttctattaaccact 591
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 332 tgcctgatgtgggacctgaaatccagtcctctggaagagcaccaagttctattaaccact 273
Query: 592 ga 593
||
Sbjct: 272 ga 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 993
Length adjustment: 10
Effective length of query: 583
Effective length of database: 983
Effective search space: 573089
Effective search space used: 573089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
