BAC Information

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BAC

Clone NameMSMg01-134L02
Chromosome2 (Build37)
Map Location 3,648,332 - 3,648,850
singlet/doubletsinglet
Overlap gene3110001A13Rik
Upstream gene9630050M13Rik, Nmt2, Rpp38, Acbd7, Olah, Meig1, Dclre1c, Suv39h2, Hspa14, Armetl1, LOC100040219, LOC666495
Downstream geneLOC100040257, LOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134L02.T7 (MSMg01no134_l02.b1)MSMg01-134L02.TJ (MSMg01no134_l02.g1)
ACCAG341345AG341346
length1,1751,157
length of high quality
(start - end)
350 (506 - 855)582 (139 - 720)
definitionCHROMAT_FILE: MSMg01no134_l02.b1 PHD_FILE: MSMg01no134_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:21 2005CHROMAT_FILE: MSMg01no134_l02.g1 PHD_FILE: MSMg01no134_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGATTCATNNNNGAGCAAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAACTGAGGAAAACCCATTTGAGGTGAGAAGCACCTG
AAAAAAATGTTCAACATCCTCATTCAAAAGGGAAATGCAACTCAAAACAA
CACTGAGATTCCATCTCACACCAGTCAGAGTGGCTAAGATTATCTATTCA
GGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGAAAATCAGTCTGGC
AGTTCCTCAGAAAACTGGACATAATTCTACCGGAAGATCCAGCAATACCA
CTCCTAGGCATATACCCAGAAGATGCTTCAACCTGTAATAAGGACCCATG
CTCCACTATGTTCATAGCAGCCTTATCTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGTTTTTCAACAGAGGAATGGATACAGAAAATGTGGTATAAA
TACTCAATGGAGTACTACTCAGCTATTAAAAACAATGAATTCATGAAATT
CTTAGATAAATGGATGGATCTGGAGGATATCATCCTGAGTGAGGTAACCC
AATTACAAAAGAACACACATGATATGGACTCACTGATAAGTGGATATTAT
CCCAGAAGCTCAGAATACCCAAGATATAATTTGCAAAACACATGAAACTC
AAGTAGAAGGAAGACCAAAGTGTGGATACTTCGTTCCTTCTTGGAAGGGA
GAACAAAATACCCATGGAAGGAGTTTACAGAGACAAAGTTCAGAGCAGAG
ACTGAAGGAATGACCATCCAGAGACTGCCCCACCTGGGGATCCATCCTAT
AAACAACCACCAAACCCAGACACTATTGCAGATACCAACAGAGCTTGCTG
AAGGTAGCCTGATATAGCTGTCTCCTGAAAAGGCTCTGCCAGTGCCTGAC
TAATACAGAAAGTGAATGCTTCCCAGTCCTTCCTTTAAATGGGACCTGGG
AGTCCCCCAATTTTATGGAGCTTTGAAAAAGGGTCCCCCAATAACTTTGA
AAGGGGTTTTTGTCACCCCCCCCTTGGGAGAAAACAACCATTTTTGTACC
TTTACCCCTTAATCCCCCCATAATTTTCTCTGGGTGGATTAATTCCCCCT
CACTTTTTTATAAAAATAACCTATC
CCGTTCTTTTNTTAACGACGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCCCCTCACACCATGTCT
TAACTTAAAGNACTGGACTTAGAAAAGACGTGAGGACCGACCCCTTGGCT
AACGAGAGCTGGGGTCTCACTAAGATCCAGATATATGCCCCCCAGACTGC
AGGGCGTCTACCTGTTACTAATAAGGGGTATACAGTGCAGAACCTCAGGG
CAGACCGCAGAGCTCTGACAACAGGATACGGGTGCACCTTCTGAGCACAC
ACTACTGACTCCCCAGCTGCCCTTCTGGATTTTAGTGTGTTTTAAGGGTT
TTGTTTTTGTCTTGCTTTGTTTTTTAAAAAGGGACAAGGAACTCTGTGGC
CGGACTCACCACTCCACCCAAATCATCAAGATAGGGTGGGTGGAGACGGA
AGACTCTCTTGCAGTTATCAAGCAGATGGAGGAAAAAGGAAAAGTTCAGC
TAGAAGCAGCTACAGAGGGAAGGAAAAGAAACCCAAGTCCATCTCTTGCT
AAGAAGACCTTCTGAATTTCAGCCCTGTGGGACACTTTTAGGAGCCAAGC
TTGGATGCTATGGTTGAGATGCCATTCAAAGAGCACGATGAGGCTTTCTC
CCTGAGGCCTGCTGGTGTCACGGCCCTTAGGGAAACGGACTCAGGATGTG
TGAAACAAAAATGATAGAAACACAAAAGGAGACACCGCCTTATAAAGGAA
TTCCCAGCTACTCCTGCAGATCTCAGCTTCCGACAAGCACCAGCTGAGGG
GAGTGAGCTAGACAGGGCGTTCTGAAGCGCACTCAGCCCCCGTGCAGATA
ACCCCACATCCGCCTGAGTACAGCCACATCAGGGTCAGGAGCCCAACTTC
AGGAAGCAGGAAAGCCCTACAGGTGACTCCAAGATTGGAACCACAGATTC
CTGTTTCTTAGCCCGACCTGGAAAAACCTCACTGGTCTAATCCCGTGGGA
CCCCCGGAATCCCCCCCTCCCGTGGGTCAAAGGCTTGTTCCCTTGGGAAA
CGCTTTTCCCTCCCCCCACAGGGTTTTCATAAACCCCGCGGTTTCCCCTC
CCCCCCGGCCCCCCCCAAACAATAACACTCCTCCCGGCCGGGTGAAATAA
TTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_l02.g1 MSMg01no134_l02.g1 CHROMAT_FILE:
MSMg01no134_l02.g1 PHD_FILE: MSMg01no134_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:21 2005
         (582 letters)



>mm_chr2_3647869_3648850
          Length = 982

 Score =  878 bits (454), Expect = 0.0
 Identities = 509/540 (94%), Gaps = 22/540 (4%)
 Strand = Plus / Minus

                                                                       
Query: 44  tatatgccccccagactgcagggcgtctacctgttactaataaggggtatacagtgcaga 103
           ||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 982 tatatgcaccccagactgcagggcgtctacctgttactaataaggggcatgcagtgcaga 923

                                                                       
Query: 104 acctcaggg-cagaccgcagagctctgacaacaggatacgggtgcaccttctgagcacac 162
           ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 accac-gggacagaccgcagagctctgacaacaggatacgggtgcaccttctgagcacac 864

                                                                       
Query: 163 actactgactccccagctgcccttctggattttagtgtgttttaagggttttgtttttgt 222
           ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 863 actaccgactccccagctgcccttctgggttttagtgtgttttaagggttttgtttttgt 804

                                                                       
Query: 223 cttgctttgttttttaaaaagggacaaggaactctgtggccggactcaccactccaccca 282
           ||||||||||||||||||||||||||                    ||||||||||||||
Sbjct: 803 cttgctttgttttttaaaaagggaca--------------------caccactccaccca 764

                                                                       
Query: 283 aatcatcaagatagggtgggtggagacggaagactctcttgcagttatcaagcagatgga 342
           ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 763 aatcatcaagatagggtgggtggagacgggagactcacttgcagttatcaagcagatgga 704

                                                                       
Query: 343 ggaaaaaggaaaagttcagctagaagcagctacagagggaaggaaaagaaacccaagtcc 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ggaaaaaggaaaagttcagctagaagcagctacagagggaaggaaaagaaacccaagtcc 644

                                                                       
Query: 403 atctcttgctaagaagaccttctgaatttcagccctgtgggacacttttaggagccaagc 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 atctcttgctaagaagaccttctgaatttcagccctgtgggacacttttaggagccaagc 584

                                                                       
Query: 463 ttggatgctatggttgagatgccattcaaagagcacgatgaggctttctccctgaggcct 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ttggatgctatggttgagatgccattcaaagagcacgatgaggctttctccctgaggcct 524

                                                                       
Query: 523 gctggtgtcacggcccttagggaaacggactcaggatgtgtgaaacaaaaatgatagaaa 582
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 523 gctggtgtcacggcccttagggaaacggactcaggatgcgtgaaacaaaaatgatagaaa 464


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)