Query= MSMg01no135_i20.b1 MSMg01no135_i20.b1 CHROMAT_FILE:
MSMg01no135_i20.b1 PHD_FILE: MSMg01no135_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:42 2005
(402 letters)
>mm_chr2_133719929_133720730
Length = 802
Score = 731 bits (378), Expect = 0.0
Identities = 394/400 (98%), Gaps = 2/400 (0%)
Strand = Plus / Plus
Query: 1 tgcagatgtccacaatacaagacattggccatgttgtcatttcaatcttgatatgtttaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgcagatgtccacaatacaagacattggccatgttgtcacttcaatcttgatatgtttaa 260
Query: 61 atccaaaaaggacattcatgacttttctgtagaagtgattctgtatttgtaaataatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccaaaaaggacattcatgacttttctgtagaagtgattctgtatttgtaaataatcat 320
Query: 121 catgaacatcctttgaacaaaataatcccggtattatggcagtagttctggtctctgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgaacatcctttgaacaaaataatcccggtattatggcagtagttctggtctctgtaa 380
Query: 181 tccttgcactagggcagcagcagaggcagaagtatcaggggttcaaagccagcctcagct 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tccttgcactagggcagcagcagaggcagaagtatcaggagttcaaagccagcctcagct 440
Query: 241 ggaccatatgtatgaggtcagtctagtttagttattctcagccttgctaatgctgtgacc 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaccttaagtatgaggtcagtctagtttagttattctcagccttgctaatgctgtgacc 500
Query: 301 ctgtatatagtttctcatgttgcagtaatctgcaaccataagtttatttttgctgctact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtatatagtttctcatgttgcagtaatctgcaaccataagtttatttttgctgctact 560
Query: 361 ttataactgtaactttgctctgatgttatgaattataatg 400
||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ttataactgtaactttgct--gatgttatgaattataatg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_i20.g1 MSMg01no135_i20.g1 CHROMAT_FILE:
MSMg01no135_i20.g1 PHD_FILE: MSMg01no135_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:42 2005
(445 letters)
>mm_chr2_133865167_133866009
Length = 843
Score = 795 bits (411), Expect = 0.0
Identities = 436/445 (97%), Gaps = 2/445 (0%)
Strand = Plus / Minus
Query: 1 ttatttttaaaaggataaaaagctaagaatgcatagtaaaatcatttggataataaaatt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 643 ttatttttaaaaggataaaaagctaagaatgcatagtaaaatcatttgtataataaaatt 584
Query: 61 gtttggcagggactttggtggcaattctacctatcatctgtatgaacttgtgcgaattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 583 gtttggcagggactttggtggcaattctacctatcatctgtatgaacttgtgcaaattac 524
Query: 121 ttttctttaactgctagctaatagacttgttcaaaggattaaattgctaacttgtcaaaa 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 523 ttctctttaactgctagctaatagacttgttcaaaggattaaattgctaacttgtc--aa 466
Query: 181 gttattgaaatactaattgggaagtattgagtacattataattgggtattatattgacat 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 465 gttattgaaatactaattgggaagtattgagtacattataattaggtattatattgatat 406
Query: 241 tgttattattactcttattattgatttaaaaatactaagaaattctatataaagaatgat 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 405 tgttattattactcttattattgatttaaaaatactaagaaattctatctaaagaacgat 346
Query: 301 ccaaatacattcaccaatttattttaaccagggaggagaaacatgctggtgtagaagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccaaatacattcaccaatttattttaaccagggaggagaaacatgctggtgtagaagata 286
Query: 361 gtaagcaaccctttttcagccatcctttgcagctaagaaatcccatgctgcgtcataaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gtaagcaaccctttttcagccatcctttgcagctaagaaatcccatgctgcgtcataaac 226
Query: 421 tcacgtgctgattaagttttcactg 445
|||||||||||||||||||||||||
Sbjct: 225 tcacgtgctgattaagttttcactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 843
Length adjustment: 10
Effective length of query: 435
Effective length of database: 833
Effective search space: 362355
Effective search space used: 362355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
