Query= MSMg01no135_l21.b1 MSMg01no135_l21.b1 CHROMAT_FILE:
MSMg01no135_l21.b1 PHD_FILE: MSMg01no135_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:56 2005
(394 letters)
>mm_chr2_38388344_38389137
Length = 794
Score = 590 bits (305), Expect = e-173
Identities = 369/391 (94%), Gaps = 4/391 (1%)
Strand = Plus / Minus
Query: 6 ggaattcctcctcctgccccgccaaggtaggactgatgctaagctctgagaagctctgga 65
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattcctcctcctgtgcagccaaggtaggactgatgctaagctctgagaagctctgga 417
Query: 66 tcctcaattaccccagctgatgcctccagaggcctgtgttaaagacaaaccactcgggag 125
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 416 tcctcaattaccccagctgatgcctccagaggactgtgttaaagacaaaccactcgggag 357
Query: 126 gctgcgctaacg-g-tggatgtggtgagggcaccgatcataggcacagagtgaacagaca 183
|||||| || | | ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 356 gctgcgtta--gtgatggatgtggtgtgggcaccgatcataggcacagagtgaacaggct 299
Query: 184 ctggagttaggaccctgtcttcctgaatctccaggcccattgcataagcagggggataga 243
||||||||||||||||||| || ||| ||||||||||||||||||| |||||||| ||||
Sbjct: 298 ctggagttaggaccctgtcctcttgagtctccaggcccattgcataggcaggggggtaga 239
Query: 244 ggtagtatcctccccctgcagtgtgttcctggtcctccttccttccctccctccctgccc 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ggtagtatcctccccttgcagtgtgttcctggtcctccttccttccctccctccctgccc 179
Query: 304 cctccaatgcttggattcttatatgcttgactcttccacaggaatgcagcaagctctgga 363
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
Sbjct: 178 cctccaatgcttggattcttatatgcttttctcttccacaggaatgcagcaggctctgca 119
Query: 364 gagtcctctcattccagatgtcccctgtcct 394
|||||||||||||||||||||||||||||||
Sbjct: 118 gagtcctctcattccagatgtcccctgtcct 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_l21.g1 MSMg01no135_l21.g1 CHROMAT_FILE:
MSMg01no135_l21.g1 PHD_FILE: MSMg01no135_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:56 2005
(613 letters)
>mm_chr2_38219589_38220601
Length = 1013
Score = 1170 bits (605), Expect = 0.0
Identities = 611/613 (99%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 1 agagaggtgcagtaagaatgtggagtgggaatctgagctggtgcaggcagtagcaaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaggtgcagtaagaatgtggagtgggaatctgagctggtgcaggcagtagcaaagac 260
Query: 61 ttccctgaaggacaggtgaatgacttcatttccctgaggctctggttcccacttacaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccctgaaggacaggtgaatgacttcatttccctgaggctctggttcccacttacaaga 320
Query: 121 tggtcattgtcctgcctggctttagacaacttgaggccagatgtaaatacactggcaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtcattgtcctgcctggctttagacaacttgaggccagatgtaaatacactggcaggg 380
Query: 181 agtttcacagatgacaggccttgaatcttttgtttcgtttcttatggtcacggggatcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttcacagatgacaggccttgaatcttttgtttcgtttcttatggtcacggggatcca 440
Query: 241 agccaggaccttgcacacgctaagcaagtgttcttccacggagctgtgcaggagacggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaggaccttgcacacgctaagcaagtgttcttccacggagctgtgcaggagacggaa 500
Query: 301 catcagcccagagaggtggagagatttcccaacgtgtcacagcaattcagtgacagacct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catcagcccagagaggtggagagatttcccaacgtgtcacagcaattcagtgacagacct 560
Query: 361 ggagctgaaactaagagctcttctgttctacccagtgctcactatttttagttctttggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggagctgaaactaagagctcttctgttctacccagtgctcactatttttagttctttggg 620
Query: 421 gaaaaaaaagtatgaaaaaagatttatttttacatgtattgatgttttgcctgcatggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaaaaaaagtatgaaaaaagatttatttttacatgtattgatgttttgcctgcatggat 680
Query: 481 gtctgtgtaaggataccagagcctctggaactggagctgtcagtgctcctacctgctgac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctgtgtaaggataccagagcctctggaactggagctgtcagtgctcctacctgctgac 740
Query: 541 acatctctccaaactctgaattaacccccccccctttttttagatcacaagataatagaa 600
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 741 acatctctccaaactctgaattaaccccccccc-tttttttagatcacaaaataatagaa 799
Query: 601 ccattattcagat 613
|||||||||||||
Sbjct: 800 ccattattcagat 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
