BAC Information

Click to search

BAC

Clone NameMSMg01-135M20
Chromosome2 (Build37)
Map Location 129,390,166 - 129,390,336
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135M20.T7 (MSMg01no135_m20.b1)MSMg01-135M20.TJ (MSMg01no135_m20.g1)
ACCAG342169
length706772
length of high quality
(start - end)
---171 (75 - 245)
definitionCHROMAT_FILE: MSMg01no135_m20.b1 PHD_FILE: MSMg01no135_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:00 2005CHROMAT_FILE: MSMg01no135_m20.g1 PHD_FILE: MSMg01no135_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTCCTAATACCGAGGCGGGCGGAATCAG
AGTTTTCCCAAAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTTCTGGTCG
CACCGC
CACCATGACAATGGGAGGAATGAAAGACGNCGGTTCGTAGGTGATGGGTG
AACTATAGATTTCCCAAAGAGGTCTCATCAATGCTGGGCACAGACTGCAT
GAAGTTGGTAGAGAGGAGACAATGCAGGAACATGGAGATGCCAAGCCTGA
GCCAAGAAAGTTGTTTTGCTATGGAATATATTATTTTTGCAGGTTGCTAT
AGTTACCGCTGTGAAATTAAAAATTAAAACCTTGTGAAAGAGAGAGGGTT
GACTGAGATGAGGCAGTTCCTTGACAGGCTGAGTTATTTATCTTTTCCCC
ATGTAACATCTGGTTTACTGTTTGCAAATTTATTCTTAATTCAGGGCTCT
AAAAAAGATTTTGCCCCCCCACGCCATGCAGAAATGAATCACTTGGTAGA
GAAAGATATATCTCCCCCCCACCCAGTGTTTATCTTGGTGACCTCCTGGT
TTGTCCCCCTGGTCCTTTGTCATCTGCCTTCTCCAAGCAATCCTCTAGGG
CTTCAGGGCTCATGAGTGGGGCTAGCATCCTGGCAAATTCCCGGCACAAT
CACAGCCACGTATCCTTTATCCATATGGTTATCCCAAGAAACCACAATTC
CTTGTTTGGAAAGATAGAATTTATGTTCTCCCAGGGGAATATCTGAGTAA
ACATAAAATAATGAATTTTCTCTTTCTCTGGTAAATGTTTGTATCAAAAA
AATAAACACACTCTCATTATAAACTCGGGTCACTCTCGAATACTAGACAG
AAAACTCCTGGATACATAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_m20.g1 MSMg01no135_m20.g1 CHROMAT_FILE:
MSMg01no135_m20.g1 PHD_FILE: MSMg01no135_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:00 2005
         (171 letters)



>mm_chr2_129389966_129390536
          Length = 571

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcaatgctgggcacagactgcatgaagttggtagagaggagacaatgcaggaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 371 tcatcaatgctgggcacagactgcatgaagttggtagagaggagagaatgcaggaacatg 312

                                                                       
Query: 61  gagatgccaagcctgagccaagaaagttgttttgctatggaatatattatttttgcaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gagatgccaagcctgagccaagaaagttgttttgctatggaatatattatttttgcaggt 252

                                                              
Query: 121 tgctatagttaccgctgtgaaattaaaaattaaaaccttgtgaaagagaga 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgctatagttaccgctgtgaaattaaaaattaaaaccttgtgaaagagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)