BAC Information

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BAC

Clone NameMSMg01-135O06
Chromosome2 (Build37)
Map Location 112,759,587 - 112,900,496
singlet/doubletdoublet
Overlap geneRyr3
Upstream geneLOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3, Slc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135O06.T7 (MSMg01no135_o06.b1)MSMg01-135O06.TJ (MSMg01no135_o06.g1)
ACCAG342234AG342235
length825712
length of high quality
(start - end)		109 (72 - 180)374 (79 - 452)
definitionCHROMAT_FILE: MSMg01no135_o06.b1 PHD_FILE: MSMg01no135_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:07 2005CHROMAT_FILE: MSMg01no135_o06.g1 PHD_FILE: MSMg01no135_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,759,587 - 112,759,695)(112,900,123 - 112,900,496)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATACGCGGAAT
TCTATGATATTTCCCACCTCATTAAAGCTGTTTAAAAATAATTTTCTCAT
TGTCATGCTTGGAACCCTCATTAACTATATAATAGTTTTATTGAAATATT
AATTTATAGCTCATAAAAACACACATTCAAAGGATATGATTCAACGGCTT
GATATTTAGCATCTTCATAGTTATACAAAACTAATCAGTTTCTAACTCTT
TATCATTCTTCCCTAATCCCAGAGAGTCATTCTCAAAATCTCATAACCCA
TTATAACTCCTATCTAGCTACACAGACACACCCTTTATATTTATATGGCG
CCCCTTTTTAACCACTAGAGTACATATCAGTCTACTTTTATATAATATAT
CAAAATTTTAAACAATATTTAAATATTCTTTTAATTCCTAAATCTACTTT
ATCTTCGAAAATAAACACTCAATACATTTATTTTACAATATTTAAAAATC
TTACCCTCCATTAAAACACCCTAATAATTAACTATACACACTATATTAAC
TATCTCCCATAATTACTAAACTCGTATCCATTTTTATTTATATAACTATA
CTATCACTATATAATACAAAACCAAATTATTATTTCACTTAATTTACCTT
CTCTCTTTTATAAATATACTCTCACACCATATTACATAATTTTCTCCCCC
TCTCACTCCCAACCCCTCTCCAACACCCTTTCTCCTATCTTCTCTTTACA
ATATATCTCCAACCCCTCTTTTTCTACCTTATCTCCTCACTGTACTCCCT
TACCTCTATTTTTATTCCCCCTTCC

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGAAACCTTGTCTTGAA
TCTGAGCTTATGGCAGCCACGCCCTCCTCTCAGTGTTCCCCTGTCCTCTC
TCTGCGCCTTTTCCTTGCACTTCCCAAGGCTGAAACCTCAAGACCTGGAG
GAGAGGAGAAGAAGCCAGCTTTTCAGTGAGCTGGTTCTTCAGTGCCTCAG
CTAAAGCATTCCTCACACAAAAAGATGCCAGGGGCATTATTCACCTTGCC
ACTTCCAGAGAGCTGAGATGTCTTATAGACAGAGAAAACATCCTGCTAAA
TAATTCTTTTTTAAGTCTATCGGTTGCACTTTTTGTGAGAAGACAAGAGT
GTGACCAAGTTTCGTGGCACATAATTGACTTCTGAGGTGAGGATGGAAGA
AAGAAAGGGACAGAGCCTGTACATCACCAGCCTGTGGACGTGAAGCAAAC
ACTCCTGGCTCTTGCCCCAAGTCAAATGGTTCTGAGTAGCGATTCACACT
TAGTGGAGGGTTGAACTGAAACTATTTGGGGACAAAATGGCATTGGGTTG
GTTCTGGGGCAAAGATCTAAACACTCTCCATTATTTTTGAATAGAATTTA
CTTGAATTTGGCTTTTGGGGTTTAATTTTCCGAAAGGGGGGAAAGGCCAA
AAGTTTTATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_o06.b1 MSMg01no135_o06.b1 CHROMAT_FILE:
MSMg01no135_o06.b1 PHD_FILE: MSMg01no135_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:07 2005
         (109 letters)



>mm_chr2_112759387_112759895
          Length = 509

 Score =  211 bits (109), Expect = 1e-59
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaagctgtttaaaaataattttctcattgtcatgcttggaaccctcattaactatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaagctgtttaaaaataattttctcattgtcatgcttggaaccctcattaactatata 260

                                                            
Query: 61  atagttttattgaaatattaatttatagctcataaaaacacacattcaa 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagttttattgaaatattaatttatagctcataaaaacacacattcaa 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)

Query= MSMg01no135_o06.g1 MSMg01no135_o06.g1 CHROMAT_FILE:
MSMg01no135_o06.g1 PHD_FILE: MSMg01no135_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:07 2005
         (374 letters)



>mm_chr2_112899923_112900696
          Length = 774

 Score =  723 bits (374), Expect = 0.0
 Identities = 374/374 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcagaaaccttgtcttgaatctgagcttatggcagccacgccctcctctcagtgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcagcagaaaccttgtcttgaatctgagcttatggcagccacgccctcctctcagtgttc 515

                                                                       
Query: 61  ccctgtcctctctctgcgccttttccttgcacttcccaaggctgaaacctcaagacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ccctgtcctctctctgcgccttttccttgcacttcccaaggctgaaacctcaagacctgg 455

                                                                       
Query: 121 aggagaggagaagaagccagcttttcagtgagctggttcttcagtgcctcagctaaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aggagaggagaagaagccagcttttcagtgagctggttcttcagtgcctcagctaaagca 395

                                                                       
Query: 181 ttcctcacacaaaaagatgccaggggcattattcaccttgccacttccagagagctgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttcctcacacaaaaagatgccaggggcattattcaccttgccacttccagagagctgaga 335

                                                                       
Query: 241 tgtcttatagacagagaaaacatcctgctaaataattcttttttaagtctatcggttgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgtcttatagacagagaaaacatcctgctaaataattcttttttaagtctatcggttgca 275

                                                                       
Query: 301 ctttttgtgagaagacaagagtgtgaccaagtttcgtggcacataattgacttctgaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctttttgtgagaagacaagagtgtgaccaagtttcgtggcacataattgacttctgaggt 215

                         
Query: 361 gaggatggaagaaa 374
           ||||||||||||||
Sbjct: 214 gaggatggaagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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