Query= MSMg01no136_n21.b1 MSMg01no136_n21.b1 CHROMAT_FILE:
MSMg01no136_n21.b1 PHD_FILE: MSMg01no136_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:23 2005
(666 letters)
>mm_chr2_143948216_143949281
Length = 1066
Score = 1195 bits (618), Expect = 0.0
Identities = 651/666 (97%), Gaps = 8/666 (1%)
Strand = Plus / Minus
Query: 5 ggaattcagttcttacccctttggctaatgaccatgtactttgggtctccttttgtcatc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 ggaattcagttcttatccctttggctaatgaccatgtactttgggtctccttttgtcatc 807
Query: 65 tgattccacattaagacaccatctgacattaattgttggtttctcagatcctctgctatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tgattccacattaagacaccatctgacattaattgttggtttctcagatcctctgctatt 747
Query: 125 ctggaatggctcaaaggtcactaataaagtcttttggccaatttattaatagtcacagct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ctggaatggctcaaaggtcactaataaagtcttttggccaatttattaatagtcacagct 687
Query: 185 atttttacttctgcttgttgcggtgcaacactgtgtagtactggaagcatagggacactg 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 686 atttttacttctgcttgttgcggtgcaacactgtgtagtactggaagcatagggacgctg 627
Query: 245 ttttcctttggtgtcttttgtaggagctgggtgggggaaagggttatacaggacatcttg 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 626 ttttcctttggtgtcttttgtaggagctgggtgggggaaagggttatacaggacgtcttg 567
Query: 305 gcatcgccaggataagtagcttcggggctgggcacaactgcaaattgcctccttgtcaag 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcatcaccaggataagtagcttcggggctgggcacaactgcaaattgcctccttgtcaag 507
Query: 365 atccccccc----acaagggagaaggcaagtgtgagaaatccaattcaagcacacaggga 420
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 at----ccctttgacaagggagaaggcaagtgtgagaaatccaattcaagcacacaggga 451
Query: 421 attcgttgattccagtgataagactccagcaataacgctcacgcaaagctggctccagcg 480
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 attcgttgactccagtgataagactccagcaataacgctcacgcaaagctggctccagcg 391
Query: 481 gctctggtggggcacgcaccctctctgctctgcgttcctcccctttgctcttggtttctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gctctggtggggcacgcaccctctctgctctgcgttcctcccctttgctcttggtttctt 331
Query: 541 tccacttctctctctctttgttttctccttctcatgtgcacacacacacaaacctcatcc 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tccacttctctctctctctgttttctccttctcatgtgcacacacacacaaacctcatcc 271
Query: 601 taccttgcttctatttacctttattccactctattcccgtgccatgcaaaatggcagcca 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 270 taccttgcttctatttacctttattccactctattcccatgccatgcaaaatggcagcca 211
Query: 661 cgcttc 666
||||||
Sbjct: 210 cgcttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_n21.g1 MSMg01no136_n21.g1 CHROMAT_FILE:
MSMg01no136_n21.g1 PHD_FILE: MSMg01no136_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:23 2005
(587 letters)
>mm_chr2_143802432_143803416
Length = 985
Score = 1058 bits (547), Expect = 0.0
Identities = 577/587 (98%), Gaps = 3/587 (0%)
Strand = Plus / Plus
Query: 1 cccaagtgattgaaaactctaacctctcttgaattctccaccagagagcacttttctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccaagtgattgaaaactctaacctctcttgaattctccaccagagagcacttttctagt 260
Query: 61 aaggtatgtaggtgtgtgcctgtatttccagcacttgggaggtagagaatgagttaaggc 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggtatgttggtgtgtgcctgtatttccagcacttgggaggtagagaatgagttaaggc 320
Query: 121 ctgcctggggtacatgagaccctgtctcaaagaagaatgggagtggggagccaaaataaa 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctggggtacatgagatcctgtctcaaagaagaatgggagtggggagccaaaataaa 380
Query: 181 gacacttcccttttggccctatccgttaaggcccaactcctcccatggggaaaaaaaaaa 240
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacttcccttttggccctatcccttaaggcccaactcctcccatggggaaaaaaaaa- 439
Query: 241 ccatctggctaccactgctgaaggaagccttgctaccgaatatcatcttgagtactaaca 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 ccatctggctaccactgctgaaggaagccttgctaccgaatatcatctcgagtactaaca 499
Query: 301 ctagctatgggatgcttcaagatgcttccagcactgtccacacacctctcgactatgttc 360
|||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||
Sbjct: 500 ctagctatgggatgcttcaagatgcttccagcactgtctaga-agctctcgactatgttc 558
Query: 361 agaggctaaacagcataaataaataaataaatcttaaaataagtaaataaataaacaagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agaggctaaacagcataaataaataaataaatcttaaaataagtaaataaataaacaagc 618
Query: 421 agacaaatgaaacaatccaaagcaatgtaaaatcgagccttctctgtctatcctgctttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agacaaatgaaacaatccaaagcaatgtaaaatcgagccttctctgtctatcctgctttc 678
Query: 481 ccacccacagaacttctattaccttctccagatactctcctagaatgtcacaaaacattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccacccacagaacttctattaccttctccagatactctcctagaatgtcacaaaacattt 738
Query: 541 tttattgactctcttgggtaggtaggtaggtagataaggtaggtagg 587
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 739 tttattgactctcttgggtaggtaggtaggtagata-ggtaggtagg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 985
Length adjustment: 10
Effective length of query: 577
Effective length of database: 975
Effective search space: 562575
Effective search space used: 562575
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
