Query= MSMg01no137_l11.b1 MSMg01no137_l11.b1 CHROMAT_FILE:
MSMg01no137_l11.b1 PHD_FILE: MSMg01no137_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:30 2005
(646 letters)
>mm_chr2_86518930_86519977
Length = 1048
Score = 1056 bits (546), Expect = 0.0
Identities = 613/650 (94%), Gaps = 29/650 (4%)
Strand = Plus / Minus
Query: 1 atgcatacaagtagatttacattaatttaggagctgggcatatgttgttcaatatataga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atgcatacaagtagatttacattaatttaggagctgggcatatgttgttcaatatat--- 591
Query: 61 acaatatatataaagacttctgactattttggctataaactttggggtgtatttgatta- 119
|| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 590 ac---------aaagacttctgactattttggctataaaccttggggtgtatttgattac 540
Query: 120 -gtttcctcaaacaagcatctgttctttccacatctagtacaaaatcctgattgacaatt 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 539 tgtttcctcaaacaagcatctgttccttccacatctagtacaaaatcctgattgacaata 480
Query: 179 aactgaactccaattcctcatttaccaaaagaataaatgagtatattgaaatgatcacta 238
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aactgaactccacttcctcatttaccaaaagaataaatgagtatattgaaatgatcacta 420
Query: 239 accaaattcacactctttaaatagtaactcatggagaactcagcaggatggcatatacag 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 accaaattcacactctttaaatagtaactcatggagaactcagcaggatggcatatacaa 360
Query: 299 taaccaaaactattgggaatctgaagcatgattgctatgaagtcaaggatatcctggctt 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 359 taaccaaaactattgggaatctgaagcatgattgctatgaagtcaaggttatcctggctt 300
Query: 359 acagtaagatggaatcttaactcaacccctgcaaaaaaaaaaaaaaaaaactcaacccct 418
|||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 299 acagtaagatggaatcttaactcaacccctgc------------aaaaaactctacccct 252
Query: 419 tcaaacaaacaaacaaaacaaaacaaaata-aaaa-aaccatataattcttagacataga 476
|||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct: 251 tcaaacaaacaaacaaaacaaaacaaaa-acaaaacaaccatataattcttagacataga 193
Query: 477 tgattaacaaataatttttgttctaaaatgttttatatattataacccaagtattagaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tgattaacaaataatttttgttctaaaatgttttatatattataacccaagtattagaca 133
Query: 537 agcaatatatatcagtatattctataatttgcttttaaagatttgatcttgccatatgtt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 agcaatatatatcagtatattctataatttgcttttaaagatttgatcttgccatatgtt 73
Query: 597 tttctcacaaggcattctgacatgttattaattggttttaattttctttg 646
||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tttctcataaggcattctgacatgttattaattggttttaattttctttg 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1048
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1038
Effective search space: 660168
Effective search space used: 660168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_l11.g1 MSMg01no137_l11.g1 CHROMAT_FILE:
MSMg01no137_l11.g1 PHD_FILE: MSMg01no137_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:30 2005
(613 letters)
>mm_chr2_86283895_86284907
Length = 1013
Score = 1058 bits (547), Expect = 0.0
Identities = 592/613 (96%), Gaps = 11/613 (1%)
Strand = Plus / Plus
Query: 1 catgatgtacaaagaagaacaggaaataaaatatacagatctggtcaataaataaataaa 60
|||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 212 catgatgtacaaagaa---caggaaataaaatatacagatctggt--------aaataaa 260
Query: 61 taaataaataaataaataaataaataaataaatacttatacaaatttttgtagccaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataaataaataaataaataaataaataaatacttatacaaatttttgtagccaagca 320
Query: 121 taatcatctatctgaaatgctgcactcactcaaaggtacatatacactaaattaagaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatcatctatctgaaatgctgcactcactcaaaggtacatatacactaaattaagaaaa 380
Query: 181 taataggttctatgaagaaactacaagttgtttcagtgacaaaatactccaaattaacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taataggttctatgaagaaactacaagttgtttcagtgacaaaatactccaaattaacca 440
Query: 241 gaaccggtataatcacagatgtagctaaggttgatgtgatgggtaagtttcatgtgatgg 300
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaccgggagaatcacagatgtagctaaggttgatgtgatgggtaagtttcatgtgatgg 500
Query: 301 gacatacaggcaaggtctatagtgatttacacacaaagcaaagaactcagttttctctca 360
|| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct: 501 gatatacaggcaaggtctatagtgatttacacgcaaagcagagtactcagttttctctca 560
Query: 361 ctgtggtcaactgagattctcatacaactcatagaaatgaatgaattagaaaggagctag 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgtggtcaactgagattctcataaaactcatagaaatgaatgaattagaaaggagctag 620
Query: 421 agaaagtacccaaggagctaaaggggtctgcagccctataagataaacaacaatatgaac 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 agaaagtacccaaggagctaaaggggtctgcagccctctaagataaacaacaatatgaac 680
Query: 481 aacccagtaatcctgagagttgtgtctctggttgcacatgtagcagaggatggcctagtt 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacctagtaatcctgagagttgtgtctctggttgcacatgtagcagaggatggcctagtt 740
Query: 541 ggccatcaataagaggagaggctcttggtcttgggaagattatatgctccagtacaggag 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggccatcaataagaggagaggcccttggtcttgggaagattatatgctccagtacaggag 800
Query: 601 aatgccagggcca 613
|||||||||||||
Sbjct: 801 aatgccagggcca 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
