BAC Information

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BAC

Clone NameMSMg01-139F10
Chromosome2 (Build37)
Map Location 33,631,802 - 33,632,045
singlet/doubletsinglet
Overlap gene2610528K11Rik
Upstream genePtrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3, Ralgps1, Angptl2, Zbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918
Downstream geneLOC100041931, Pbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139F10.T7 (MSMg01no139_f10.b1)MSMg01-139F10.TJ (MSMg01no139_f10.g1)
ACCAG344770AG344771
length788711
length of high quality
(start - end)
---245 (66 - 310)
definitionCHROMAT_FILE: MSMg01no139_f10.b1 PHD_FILE: MSMg01no139_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:42 2005CHROMAT_FILE: MSMg01no139_f10.g1 PHD_FILE: MSMg01no139_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTGCGCCGCTATACGACTCCTATTTTCAGAGATGGGCGGAATTCCA
TCCTACTTCCACTCCTGCTACACACACACACACACACACACACTCACATA
CACACACACACATTTACACACACACACACATATAGGCCTAGTGTATCGGT
GTGGGTCTGACCCCAGGACAGAAACTCTGTCTAGGATATTGAAGATCAGA
GGAGGATCAGAAGTATTTCTACCACATTTTTTATTTTCTCCCCCCACCCA
TTTCTTTCCCCCTCTTTCCCCCCCTTTTTTTATTTTTTTCGCCGCTGCCT
CAAATCCTCACATTAATTTTTTTTTTTTTATTTTTATCCCTAATAATTAT
TAATTTTATTTTTCTCCCTCTTCTATATACTATTTAATCTTCCAGCACTT
AGCTCTTGTTTTTTTGTCTCCCCCCCCACCATTTATTATCTCTATCCCTA
TTTTTTTTTCTCTGTCTTTCCTCCTTCTTCTTTTTCTCCTTCTTTCCTTT
ATTATCTTCCATCCCCTTTCCTTCTCCCCCCTCTCCCCATTTTTACCCAC
CTTTCGTCTCCCCTTCCTATTTTATTATATCCTACATCCTCTTCCTTTTT
CCCGGCCGTCTTTTTCTCCCTTTTTTTCTTCTCTTTTTTCCCCCTCCTCC
CCTCCCTCTTCTTTTTCCCTCTATTATTTACTTACTTTTTCTTGCTTATC
ATTCTCCCTCCCCCCCCGTTTATTCTTTTCCTCTTCTTTCTTCTCCCCCC
TCCCCCGCTTAATTCCTCCCCTCCATATCTCTAACTAT
TGAATGGGGAGCCTGGCGGCGCCTGGATCAGAATTGAGGTGAACTATAGA
AGGATTCTGAAATACCTCGAGAGGTGACATCATTGTTAATAATTTTAACG
GTAAGATTTCTTTACCTAAAAACGAATTGACTTTTTTTTAACAAGCTGAC
AGTATACTTGGCTGGGGCTTTTACTAACTTAGCCCCCCCACCCTCCACTT
CCTGTCTAGAGTGTTCAAAGTGTAGGCTGGGTGGACAAGCCTGCTGGTAT
TCAGGTGGGAAAGAAATCGTCATACTGTGGCCATCGTGAGCTTGGAAGCA
AAGGCACAAGGTTCTTTATTTCACAGCCAGTCACCTCCAAGGACAAGAAG
TGCTCCTCCAATGGCAGACTCTGCCATGGCCTGCACCACCTCTGAGAATG
TCCTCTGCGCCATCCGTCCTCTGTCCTCTGACATCTTCATACCACAAGCT
CCTGTCCCTCACAGAAGTCTCCCTGACTCTCCCCTTATAAGGGAGCCCAG
TGTGTTCTAGACAGCAGTCTTGTCTCCCCTCTCCTCAGACCCCATTTATT
ACACGTCCCCCCAAGGCTCTCCTTGATCCCACTTCCTGGAAATTCCCTCA
CCTCTATAGTAGCCCCCGCTATTGTTTTTTTCGCACTTCCCTCCCTCCCT
CTCTCTTCTCCCCCTCCCCCTTTCTCTTTCTTTCTCCCCCTCTCCCTTTT
TCTTCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_f10.g1 MSMg01no139_f10.g1 CHROMAT_FILE:
MSMg01no139_f10.g1 PHD_FILE: MSMg01no139_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:42 2005
         (245 letters)



>mm_chr2_33631602_33632245
          Length = 644

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgagaggtgacatcattgttaataattttaacggtaagatttctttacctaaaaacga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 ctcgagaggtgacatcattgttaataattttaacggtaagatttctttacataaaaacga 385

                                                                       
Query: 61  attgacttttttttaacaagctgacagtatacttggctggggcttttactaacttagccc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 attgac-tttttttaacaagctgacagtatacttggctggggcttttactaacttagccc 326

                                                                       
Query: 121 ccccaccctccacttcctgtctagagtgttcaaagtgtaggctgggtggacaagcctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccccaccctccacttcctgtctagagtgttcaaagtgtaggctgggtggacaagcctgct 266

                                                                       
Query: 181 ggtattcaggtgggaaagaaatcgtcatactgtggccatcgtgagcttggaagcaaaggc 240
           || |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggagccaggtgggaaagaaatcgtcatactgtggccatcgtgagcttggaagcaaaggc 206

                
Query: 241 acaag 245
           |||||
Sbjct: 205 acaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 644
Length adjustment: 9
Effective length of query: 236
Effective length of database: 635
Effective search space:   149860
Effective search space used:   149860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)