BAC Information

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BAC

Clone NameMSMg01-139L03
Chromosome2 (Build37)
Map Location 120,702,599 - 120,827,966
singlet/doubletdoublet
Overlap geneUbr1, Tmem62
Upstream geneLOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2
Downstream geneRnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3, Ctdspl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L03.T7 (MSMg01no139_l03.b1)MSMg01-139L03.TJ (MSMg01no139_l03.g1)
ACCAG345029AG345030
length707697
length of high quality
(start - end)
492 (46 - 537)513 (71 - 583)
definitionCHROMAT_FILE: MSMg01no139_l03.b1 PHD_FILE: MSMg01no139_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:10 2005CHROMAT_FILE: MSMg01no139_l03.g1 PHD_FILE: MSMg01no139_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,827,600 - 120,827,966)(120,702,599 - 120,703,111)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGTGTAGATGACGAATTTAGATGACAGACACACGTGCCAGAGGT
CTATAGTATACTATTTTATCCTCAGGTAGATTTGAAAGACTGTGCCATGT
TCAAAGGATGACTAATACAGCCCTCACTCTTTTCATAGGATTCAGTATCC
AAGTGCACAAACTTTTTAAAAAAGGTTTATTTATTTCACATATGAGTACA
CTGTAGCTGTCTTTAGACACACCAGAAGAGGGCGTCAGATCCCCCATTAC
TGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTC
TAGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCATG
TACAAACTTCTAAAAGCTTTATCACATATATAAATAGTTTCCATTTTTAT
CTTACACAAGAGTATCTGTCCAAAAAGTCCTTCTCCACATATGATAGGTT
CTTCTTCCAGCAGCCCTCACCATAACGCTCTACCTACCAGTGACAGACAA
CACAGATCTAGGGATGCTCTGTGGAAGGACAGACGGAAGGAGGCGCCATC
TATCAGGCAGGGAAGACGCCCCAGAGGCCGGAGAGTCTTGCACCTGGACT
TTTAGCCACGGAATTTCAAGAACAGCACCCTGCCGTTGTTTAGGCCAAAC
TTTGGTG
NCATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAATGGCTGAGAGGAACACTGCCAAACTTT
TGAACAAGGACCTGGACTGACTGAGGGGCGCCCAGGCCAAGCGAGCAGCC
AGGGTCTGCTACTCACCCGTCTGTGTGCTGCGACACTTCCACAAAGAAAG
CAGATGCACAGCGAGCCTCCTCACTATCCTCTTCACCCTCAGCAAGCGGC
GGCCCTGGAGACAGATCTGCAGGGCAGATTGAAACATTTGCTCCCTGCTA
GAGAGGTCAAAGACACCACAAGAAAACCTACAGAAAGCTAACCTGGGTCC
ATAGGGGCTCACCGAGACTGAACCACCAACCAGAGAGCATGGATGGGACG
GACCTAGGCACCCACACATAAGTAACCGATGTGCAGCCGGGTCTTCATGT
GGGACCCCTAATAGCAGAAGCAGGGCTCTCTCTGACTTTGTTTGCCTGCC
TTATCTCCCTTTCCCCTGACTGGGCTGCCCTGTCTAGCCTCAATAGAAGA
ATTAGTTCTACTGCAATTTGATAAGCCAAAGTGGGTTGATATCCATGGGA
GGCCTCTTCTCTCATGAAAAAATGATGAGAGAGTGTGTGCGCGCATGCGT
GTGCGTGTGTGTGTGCGTGAGTCCGCCTTTTTTTTCCCCTTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l03.b1 MSMg01no139_l03.b1 CHROMAT_FILE:
MSMg01no139_l03.b1 PHD_FILE: MSMg01no139_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:10 2005
         (492 letters)



>mm_chr2_120827600_120828491
          Length = 892

 Score =  694 bits (359), Expect = 0.0
 Identities = 365/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtgtagatgacgaatttagatgacagacacacgtgccagaggtctatagtat 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaattcttgtgtagatgatgaatttagatgacagacacacgtgccagaggtctatagtat 308

                                                                       
Query: 65  actattttatcctcaggtagatttgaaagactgtgccatgttcaaaggatgactaataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actattttatcctcaggtagatttgaaagactgtgccatgttcaaaggatgactaataca 248

                                                                       
Query: 125 gccctcactcttttcataggattcagtatccaagtgcacaaactttttaaaaaaggttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccctcactcttttcataggattcagtatccaagtgcacaaactttttaaaaaaggttta 188

                                                                       
Query: 185 tttatttcacatatgagtacactgtagctgtctttagacacaccagaagagggcgtcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tttatttcacatatgagtacactgtagctgtctttagacacaccagaagagggcgtcaga 128

                                                                       
Query: 245 tcccccattactgatggttgtgagccaccatgtggttgctgggaattgaactcaggacct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tcccccattactgatggttgtgagccaccatgtggttgctgggaattgaactcaggacct 68

                                                                       
Query: 305 ctagaagagcagtcagtgctcttaaccactgagccatctctccagcccatgtacaaactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 67  ctagaagagcagtcagtgctcttaaccactgagccatctctccagcccatgcacaaactt 8

                  
Query: 365 ctaaaag 371
           |||||||
Sbjct: 7   ctaaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no139_l03.g1 MSMg01no139_l03.g1 CHROMAT_FILE:
MSMg01no139_l03.g1 PHD_FILE: MSMg01no139_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:10 2005
         (513 letters)



>mm_chr2_120702399_120703311
          Length = 913

 Score =  984 bits (509), Expect = 0.0
 Identities = 512/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggctgagaggaacactgccaaacttttgaacaaggacctggactgactgaggggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggctgagaggaacactgccaaacttttgaacaaggacctggactgactgaggggcg 260

                                                                       
Query: 61  cccaggccaagcgagcagccagggtctgctactcacccgtctgtgtgctgcgacacttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaggccaagcgagcagccagggtctgctactcacccgtctgtgtgctgcgacacttcc 320

                                                                       
Query: 121 acaaagaaagcagatgcacagcgagcctcctcactatcctcttcaccctcagcaagcggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaagaaagcagatgcacagcgagcctcctcactatcctcttcaccctcagcaagcggc 380

                                                                       
Query: 181 ggccctggagacagatctgcagggcagattgaaacatttgctccctgctagagaggtcaa 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccctgaagacagatctgcagggcagattgaaacatttgctccctgctagagaggtcaa 440

                                                                       
Query: 241 agacaccacaagaaaacctacagaaagctaacctgggtccataggggctcaccgagactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacaccacaagaaaacctacagaaagctaacctgggtccataggggctcaccgagactg 500

                                                                       
Query: 301 aaccaccaaccagagagcatggatgggacggacctaggcacccacacataagtaaccgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccaccaaccagagagcatggatgggacggacctaggcacccacacataagtaaccgat 560

                                                                       
Query: 361 gtgcagccgggtcttcatgtgggacccctaatagcagaagcagggctctctctgactttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgcagccgggtcttcatgtgggacccctaatagcagaagcagggctctctctgactttg 620

                                                                       
Query: 421 tttgcctgccttatctccctttcccctgactgggctgccctgtctagcctcaatagaaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgcctgccttatctccctttcccctgactgggctgccctgtctagcctcaatagaaga 680

                                            
Query: 481 attagttctactgcaatttgataagccaaagtg 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 attagttctactgcaatttgataagccaaagtg 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)