BAC Information

Click to search

BAC

Clone NameMSMg01-140A06
Chromosome2 (Build37)
Map Location 85,606,077 - 85,606,483
singlet/doubletsinglet
Overlap genenone
Upstream geneSerping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012
Downstream geneOlfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140A06.T7 (MSMg01no140_a06.b1)MSMg01-140A06.TJ (MSMg01no140_a06.g1)
ACCAG345272AG345273
length713702
length of high quality
(start - end)
410 (47 - 456)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no140_a06.b1 PHD_FILE: MSMg01no140_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:36 2005CHROMAT_FILE: MSMg01no140_a06.g1 PHD_FILE: MSMg01no140_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGC
GGAATTCTCTCCCTTGTGTAAGGAGGACTAAGGAGTGTCTATCCACTCTT
CATGTGATCCCAATGATTAAAAAAAAAAAAGTTCAATTTCAAAGTTCATA
CTGGAGAACTATGAGTTTGGATTAGAGACAATTGGTACAAAGTTACTGAT
GGGAGTGTAGGTGACCCAGAAGCAGCTACAATGAAAAGCTTTTACTCAGC
CTGCATGATGGTATTTTATAGTTTCATAAATAGATCTTTAAAAAAAAACA
TAGGCCAGACTAAAATAAAAACCTTGAAAATCCCATTTATCTGTTTGGTA
TATTCTTTCTGGAGTAGACTCACTTTCCCCGTTACCAGTTTTTCTAAGTT
GTCCATAGTTCTTTGTATACAGATGAGGACCTATAAACTTTTCCCTGACT
TCTTAAGCATGTCCATCGGTGTCATCCCAGTTCAGTTCACTTTTTATTAG
ATATTTTCCTCATCTACTTTTCCCATGCCATCTCGAATTGTCCCCTATAC
CCTCTCCCCCTTTTCCCTTCCTCTTTTTATTTTCCCCCTTTGGTCCTGAC
TTTATTTTGTTTCCGGTTACCATTTTAGCCCGATATTTCTTCGTTTTTAC
CGTTTCCATGTGCGCCTTTTTCCCCTTTTCCTTTTTCCTTCATTTCCCAC
CATTTTCGCCCCG
CCGATGTAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGTTTTATGCCCCATTTT
TAGTTAGGATGTTTAGTTTGTTGGAATTTAATTTCTTGAGTTCTTTATAT
ATTTTGGATATTAGCTCTCCATCAGATACAGGGCTAGTAAAAATCTTTTC
CCAATCTGTAGGGTGCAGTTTTGTCCAGTTGACAGTGTCCTTTGCCTTAC
AGTTCCATGAAGTATCATTTATCAATTGTTGATCTTAGGGCCTGAGATTT
GGTGTTCTTTTCAGGAAATTGTCTCCTGTACCAATGTGTTCAAGGCGATT
TCCTACCTTCTCTTCTACTAGATTTAGTGTATATGGATTTATGTTGAGAT
TCTTGGTCCAGTTGAACTGGTACTCTCTGCTGCGTGATATATATGCATCT
ATTCCTATCCTTCTACTTGTCCATCCTCAATTAGATCACTACCACTTGTT
GAATATGATTTTCTTTTATTCTCTGAACATTGCTGCCTTCTTTCGCTCAT
CCTCTGTCTTCTTCAGCTACCCGCTTCTACTCACTGTCTCATCTCTTAAC
TCCTTCCCTCCTCTTCTCTGTCCCTGCTTCTTCTTTCCTTCCACTCATTT
CGCCCGCTCTCCTCATCCTCATTTTCTTTCCTTCTTCTTCCTCTCTTCCA
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_a06.b1 MSMg01no140_a06.b1 CHROMAT_FILE:
MSMg01no140_a06.b1 PHD_FILE: MSMg01no140_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:36 2005
         (410 letters)



>mm_chr2_85605984_85606795
          Length = 812

 Score =  752 bits (389), Expect = 0.0
 Identities = 402/407 (98%), Gaps = 2/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctctcccttgtgtaaggaggactaaggagtgtctatccactcttcatgtgatccc 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattctctcccttgtggaaggaggactaaggagtgtctatccactcttcatgtgatccc 441

                                                                       
Query: 66  aatgattaaaaaaaa--aaaagttcaatttcaaagttcatactggagaactatgagtttg 123
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aatgattaaaaaaaaataaaagttcaatttcaaagttcatactggagaactatgagtttg 381

                                                                       
Query: 124 gattagagacaattggtacaaagttactgatgggagtgtaggtgacccagaagcagctac 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gattagagacaattggtgcaaagttactgatgggagtgtaggtgacccagaagcagctac 321

                                                                       
Query: 184 aatgaaaagcttttactcagcctgcatgatggtattttatagtttcataaatagatcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatgaaaagcttttactcagcctgcatgatggtattttatagtttcataaatagatcttt 261

                                                                       
Query: 244 aaaaaaaaacataggccagactaaaataaaaaccttgaaaatcccatttatctgtttggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaaaaaaacataggccagactaaaataaaaaccttgaaaatcccatttatctgtttggt 201

                                                                       
Query: 304 atattctttctggagtagactcactttccccgttaccagtttttctaagttgtccatagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atattctttctggagtagactcactttccccgttaccagtttttctaagttgtccatagt 141

                                                          
Query: 364 tctttgtatacagatgaggacctataaacttttccctgacttcttaa 410
           |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 140 tctttgtatagagatgaggacctataaacttttccctgacttcttaa 94


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 812
Length adjustment: 9
Effective length of query: 401
Effective length of database: 803
Effective search space:   322003
Effective search space used:   322003
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)