NAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATCACCTGCCAGGAAATCCATATCAGGTTTTGGTTCACTTA
GCCAGTTAGTTAAATTTCAAGGGTCTTAAATTTTAACATAATAGATATCT
GAAGGGCATCAATATAAAAAAATCTCAATAATGAAAGAGATATACAAGCA
GAAAGGTAGTATAAGTAACCAGATAATATAGAAAATGCAGGGTAGAAAGT
CATAATGGTTAAAGACCTAGGGATTTTGCACGTTATGTAGTAAATGAAGA
GCAAACCTAGACAAAAGAGGTCTAGTGGGTCAGAGGGAAATCAGAGGACA
TTCTGGCAAGAGACTTCAGTGACAGCCTTTCTAGAATAAAAGGAGGAGGG
GATGAGTCTGGGAAGATGAGTTATCTTACAAACTTAAATTAGTGGATTGA
TTATAACACTCAAAGAAACAACAGGACAACAGAAATGTGTCAGTCATTTA
ATATCCAGCTTAAGACTGTACAGGATACAATATGCTGAACTATAATCATT
AAATGGAATTACCACGGATAGGGCACACAACTAAAGTCCTACAGCTTAGG
AGATATTGTGGGCAGCCTAGTCTTTTCAGGAAGTTTCAGACCACGCTAAA
CTACAAAGTGAGACCATAACCTCACAAAAACACACAAAATTAAATGAAAT
CCTATACTTAGTATCAT

NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGTCTGACCAGATGACCTTATCA
TTAAGGATATGATACCCAGTGTGGGAATTATGCCTGAGTTGCTCTTTCCT
GTCCCTTTAAGTGGGGGAACACAGAACTGCAGGTGTGTACTGGCTGGTTT
TGTGTGTCAAATTGACACAAGCTGGAGTTATCATAGAGAAAGTACAGGCG
GCTGGAGCCTAGAAGACAAAGTGTGTGCTACAAAGGGCATAGCTGGAGAA
GTGACCCAAGCCCTTGGAGGAGCCCAGAAGATTGTGAGTTGGATCCCAGA
CATTGGATGGTTGGAGACTGATTTTTGCTTTTGATTGTGACTGTGCCCTG
ATATTTTTCCCTCTTGAAAGAAGAAAGTATTTTAGTGGATCCCACAGTTA
AGACTTTGAATTTTAAAAGATATTAGGCATTTTAAAGGGATTGAACTTTT
AATATGTAAAGACTGTGCGACTTTTAAAGTTATTTAGATCTTGGGGATGA
TGCTAATCTTTTCTCTCTGTTATATATTGTATTTTAAATAGTTAATGAGT
ATTAACTATTGATAAAGTTCAGAGCCCAATTATTTCAACTTTATCTTAAC
TTCAAGCATATAATCACCCAAAGACCTGACATAAGCTAAAATGAAATAAA
TAAAGTTGAGA

Query= MSMg01no140_a17.g1 MSMg01no140_a17.g1 CHROMAT_FILE:
MSMg01no140_a17.g1 PHD_FILE: MSMg01no140_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:38 2005
         (635 letters)



>mm_chr2_15605085_15606119
          Length = 1035

 Score = 1222 bits (632), Expect = 0.0
 Identities = 635/636 (99%), Gaps = 1/636 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtctgac-cagatgaccttatcattaaggatatgatacccagtgtgggaattatgcct 59
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ctgtctgacacagatgaccttatcattaaggatatgatacccagtgtgggaattatgcct 259

                                                                       
Query: 60  gagttgctctttcctgtccctttaagtgggggaacacagaactgcaggtgtgtactggct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagttgctctttcctgtccctttaagtgggggaacacagaactgcaggtgtgtactggct 319

                                                                       
Query: 120 ggttttgtgtgtcaaattgacacaagctggagttatcatagagaaagtacaggcggctgg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggttttgtgtgtcaaattgacacaagctggagttatcatagagaaagtacaggcggctgg 379

                                                                       
Query: 180 agcctagaagacaaagtgtgtgctacaaagggcatagctggagaagtgacccaagccctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcctagaagacaaagtgtgtgctacaaagggcatagctggagaagtgacccaagccctt 439

                                                                       
Query: 240 ggaggagcccagaagattgtgagttggatcccagacattggatggttggagactgatttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaggagcccagaagattgtgagttggatcccagacattggatggttggagactgatttt 499

                                                                       
Query: 300 tgcttttgattgtgactgtgccctgatatttttccctcttgaaagaagaaagtattttag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcttttgattgtgactgtgccctgatatttttccctcttgaaagaagaaagtattttag 559

                                                                       
Query: 360 tggatcccacagttaagactttgaattttaaaagatattaggcattttaaagggattgaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggatcccacagttaagactttgaattttaaaagatattaggcattttaaagggattgaa 619

                                                                       
Query: 420 cttttaatatgtaaagactgtgcgacttttaaagttatttagatcttggggatgatgcta 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cttttaatatgtaaagactgtgcgacttttaaagttatttagatcttggggatgatgcta 679

                                                                       
Query: 480 atcttttctctctgttatatattgtattttaaatagttaatgagtattaactattgataa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atcttttctctctgttatatattgtattttaaatagttaatgagtattaactattgataa 739

                                                                       
Query: 540 agttcagagcccaattatttcaactttatcttaacttcaagcatataatcacccaaagac 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agttcagagcccaattatttcaactttatcttaacttcaagcatataatcacccaaagac 799

                                               
Query: 600 ctgacataagctaaaatgaaataaataaagttgaga 635
           ||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctgacataagctaaaatgaaataaataaagttgaga 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)