Query= MSMg01no140_h20.b1 MSMg01no140_h20.b1 CHROMAT_FILE:
MSMg01no140_h20.b1 PHD_FILE: MSMg01no140_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:14 2005
(564 letters)
>mm_chr2_181587399_181588363
Length = 965
Score = 1036 bits (536), Expect = 0.0
Identities = 554/562 (98%), Gaps = 5/562 (0%)
Strand = Plus / Minus
Query: 6 gaattcttgtcttcccc---cccagaaactgtgccaaaggatggtgcattttcttagtag 62
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gaattcttgtctt--ccaaacccagaaactgtgccaaaggatggtgcattttcttagtag 708
Query: 63 gggcacatttgtttaaataacaaaatttcagaaaaccagtctgacaaattcaccctacaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gggcacatttgtttaaataacaaaatttcagaaaaccagtctgacaaattcaccctacaa 648
Query: 123 atgattgataggattatacctatacaaatgtacggcatcttgaataatatctgaagctct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atgattgataggattatacctatacaaatgtacggcatcttgaataatatctgaagctct 588
Query: 183 ccacagccacatagtgaattaaaacccaacctacattccagtcagtttctccaacatatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccacagccacatagtgaattaaaacccaacctacattccagtcagtttctccaacatatc 528
Query: 243 ccacagtgactacaccatgaaatgtgtgtcccatagtttgcccggttctagctttctact 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 527 ccacagtgactacaccatgaaatgtgtgtcccaaagtttgcccggttctagctttctact 468
Query: 303 cctctctgtaactttaggtttttccaccattttaataagttctccataataataactgaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cctctctgtaactttaggtttttccaccattttaataagttctccataataataactgaa 408
Query: 363 tatgaaaattaaaggattagattaaatgctgatgagcaacagctataaaaattaatcaag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tatgaaaattaaaggattagattaaatgctgatgagcaacagctataaaaattaatcaag 348
Query: 423 tttttcctctgagcctctgctcccagaataaataattattctctaagactaattattcat 482
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 347 tttttcctctcagcctctgctcccagaaaaaataattattctctaagactaattattcat 288
Query: 483 tgatagatgactaggctgtaagttttggcttgttttctgactttttcttaactcattatc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgatagatgactaggctgtaagttttggcttgttttctgactttttcttaactcattatc 228
Query: 543 cctgttattttaacctgggttc 564
||||||||||||||||||||||
Sbjct: 227 cctgttattttaacctgggttc 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 965
Length adjustment: 10
Effective length of query: 554
Effective length of database: 955
Effective search space: 529070
Effective search space used: 529070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_h20.g1 MSMg01no140_h20.g1 CHROMAT_FILE:
MSMg01no140_h20.g1 PHD_FILE: MSMg01no140_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:14 2005
(561 letters)
>mm_chr2_181427850_181428810
Length = 961
Score = 1069 bits (553), Expect = 0.0
Identities = 559/561 (99%)
Strand = Plus / Plus
Query: 1 ccatggcgcccaactcaccagcgacctaaaggcagatgggggcgggagggccaggttcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatggcgcccaactcaccagcgacctaaaggcagatgggggcgggagggccaggttcgg 260
Query: 61 actgggccccaccctggctgccgaaggggcgtgctctaaagcagtagggatttaagtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggccccaccctggctgccgaaggggcgtgctctaaagcagtagggatttaagtcag 320
Query: 121 acagcaagacgtactcccgggcacgaggtagaaaggctcacggagtccccgctcagatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcaagacgtactcccgggcacgaggtagaaaggctcacggagtccccgctcagatgg 380
Query: 181 ggccgaggatgcagcattcacccttatggctcaccgggccaactgctagcggacccaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccgaggatgcagcattcacccttatggctcaccgggccaactgctagcggacccaact 440
Query: 241 cgaagggtgggtaaggtggcaggtcgggagtctcgtctggcccctccccaccaagctagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaagggtgggtaaggtggcaggtcgggagtctcgtctggcccctccccaccaagctagc 500
Query: 301 gggcaggagacgcgtaaacctgggttcttccggcccccacctttgagcaatcacttctca 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcaggagacgcggaaacctgggttcttccggcccccacctttgagcaatcacttctca 560
Query: 361 acgctctgagctgaagaaaaaggggaaccttgctgcggctctccctcccccacgcgcaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acgctctgagctgaagaaaaaggggaaccttgctgcggctctccctcccccacgcgcaag 620
Query: 421 gggtgggtctggtcctactgcgacctagatccacgtggaccggtcactgaagtccgggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggtgggtctggtcctactgcgacctagatccacgtggaccggtcactgaagtccgggaa 680
Query: 481 cagagccggcatctatatcgccagtgcccgtccacggtccggcgcagcactcaccgccgc 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagccggcatctatatcgccagggcccgtccacggtccggcgcagcactcaccgccgc 740
Query: 541 gtccccgagtcacgccgcccg 561
|||||||||||||||||||||
Sbjct: 741 gtccccgagtcacgccgcccg 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
