BAC Information

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BAC

Clone NameMSMg01-141C11
Chromosome2 (Build37)
Map Location 58,781,899 - 58,782,591
singlet/doubletsinglet
Overlap geneBC062650
Upstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2
Downstream genePkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141C11.T7 (MSMg01no141_c11.b1)MSMg01-141C11.TJ (MSMg01no141_c11.g1)
ACCAG346104AG346105
length1,0171,240
length of high quality
(start - end)		747 (89 - 835)695 (89 - 783)
definitionCHROMAT_FILE: MSMg01no141_c11.b1 PHD_FILE: MSMg01no141_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:14 2005CHROMAT_FILE: MSMg01no141_c11.g1 PHD_FILE: MSMg01no141_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCAATCCNTATGGCGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAAGGCCCATACCTAAACCTTTTAAAAGCAATCTAC
AGCAAACCAGGAGCCAACATCAACGTAAATGGAGAGAAGCTGCAAGCAAT
CCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTT
TCAACATAGTACTTGAAGTATTAGCCAGAGCAATTGGACAACAAAAGGAG
ATCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGC
AGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAAC
TCCTAATCCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAAC
TCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAA
AGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAAT
ATCTCGGAGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAAC
TTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGA
TCCCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCT
TGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACT
CAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAA
CAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTG
GTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGGTA
AAAACTGCATGGTACTGGTATAGACCCCGACCAGTAGACCAATGGAAATA
GAATTGAAGACCCCGAAATGAACCCCCCCACCCATGGGCCCCTTGATCTT
CGACCAAGGGAGGTTAAAACCCTCCCTGGGGAAAAAAAAAAAAGCATTTT
TTAAAAATGGGGGGGGG

NNCCCTCTCTTTTNNAAAGATGTGAGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTATGGATAGAATGTTT
ATAGTTTTTGTGGCTTTATTTCCAGACAAAGACAGATGTTGACCAGCTGA
GATTAGATAAACTGTTACCTGTTAGGTAATTTTCACAGGCATCTTTCTAT
GCTTGAAATTATTGTCATGAAAAAAATCAGAGGGTGGAGTCTTTTTATGA
ATGAGCACAGAACTATTCTAAGAAACAAAATTATCGTGCTAGATTGGCGT
TAAAATGACGGATAATGTAATATAGGTCTCTGCACCACCATTTTGCTATA
TGTGGCTCTTAGAATGATATGAGAAAATCATAGAATTTTCTCTGTATCAT
AGGATTTTAGGAGATGAATTGCTATGGGATGATAAGTCTAGAGTTCCATG
GACTCCAAGTTAGTTCTAGCTTTCTCCCAGGATGGAAATTGTGAGCAAGG
GTCATATATTAGAGACATATGTCTTCCCCTGTATAGTGTTTGAAAATTCT
CTGTAAACATAGTGAAATATAGGACTGCCTGCATCTGAACTGGGAGACAT
TGCTGGGCAAACCAGGATGCCACCAGTGAGTGTATAATCTTCAGTTCTAC
CTCAGAGATACTTTGGGGAGGGATCTGCCATTCTGTGAATTCTCAGGTCC
ATGTGCCATCAATTCAGTAAATGCCCAAAGTCAGCTTTAGTGGAACGTTG
GCACTTGAATGTTCAGGCAAATACCCAGAATTACATACAGCTGTAGAGAA
CCTTTGGGGAAGGAGACAGTGTAAAACCAAAGGACATAGGTTATCTAGCA
ATGATAGAGTGCAGGTTATAGGCTGGGAATATGTCTTCTGCTCAGAAGAA
TCCAAAAGCTCCTTTGAAGTGCAAAGTTTCTGAATGGTCCTTGTGATGCA
TAATCCCATGGTGGTTTTGCTTGAGCCACTACCCCTGGATAAAACAACTG
TGTATTTGGGTGAAATTTTTGAATACACCCTCCTCGGGACCAGTGTAGTT
GGTTTACTCTCTTAAAACTCTTTTTGTGGTCGTAAGGCTTTTCTTAAAAC
CTTTTTGCTTTTTCATAAGTGGTCATTTTCAACCATACTTTCTCTTTGTT
GTTTCTCTTTTGCTCTGGCTCTGTTTTTTTCTAATTCCGGCTCCTCTTCT
CACAATTATCTCGTCGGAATTTTCATTCATCAATTTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_c11.g1 MSMg01no141_c11.g1 CHROMAT_FILE:
MSMg01no141_c11.g1 PHD_FILE: MSMg01no141_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:14 2005
         (695 letters)



>mm_chr2_58781699_58782791
          Length = 1093

 Score = 1201 bits (621), Expect = 0.0
 Identities = 676/695 (97%), Gaps = 2/695 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatagaatgtttatagtttttgtggctttatttccagacaaagacagatgttgaccagct 60
           |||||||| ||||||||||||||||||||||||| |||||||||||||||||||  | ||
Sbjct: 893 gatagaatatttatagtttttgtggctttatttcaagacaaagacagatgttgattaact 834

                                                                       
Query: 61  gagattagataaactgttacctgttaggtaattttcacaggcatctttctatgcttgaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 833 gagattagataaactgttacctgttaggtaattttcacaggcatctctctatgcttgaaa 774

                                                                       
Query: 121 ttattgtcatgaaaaaaatcagagggtggagtctttttatgaatgagcacagaactattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ttattgtcatgaaaaaaatcagagggtggagtctttttatgaatgagcacagaactattc 714

                                                                       
Query: 181 taagaaacaaaattatcgtgctagattggcgttaaaatgacggataatgtaatataggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 713 taagaaacaaaattatcgtgctagattggcgttaaaatgacggataatgtaatatcggtc 654

                                                                       
Query: 241 tctgcaccaccattttgctatatgtggctcttagaatgatatgagaaaatcatagaattt 300
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 653 tctgcaccaccattttgctatatgtggctcttaggatggtatgagaaaatcatagaattt 594

                                                                       
Query: 301 tctctgtatcataggattttaggagatgaattgctatgggatgataagtctagagttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctctgtatcataggattttaggagatgaattgctatgggatgataagtctagagttcca 534

                                                                       
Query: 361 tggactccaagttagttctagctttctcccaggatggaaattgtgagcaagggtcatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tggactccaagttagttctagctttctcccaggatggaaattgtgagcaagggtcatata 474

                                                                       
Query: 421 ttagagacatatgtcttcccctgtatagtgtttgaaaattctctgtaaacatagtgaaat 480
            ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 473 ctaga--catatgtcttcccctgtatagtgtttgaaaattctctgtaaacgtagtgaaat 416

                                                                       
Query: 481 ataggactgcctgcatctgaactgggagacattgctgggcaaaccaggatgccaccagtg 540
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 415 ccaggactgcctgcatctgaactgggaggcattgctgggcaaaccaggatgccaccagtg 356

                                                                       
Query: 541 agtgtataatcttcagttctacctcagagatactttggggagggatctgccattctgtga 600
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agtgtataatcttcagctctacctcagagatactttggggagggatctgccattctgtga 296

                                                                       
Query: 601 attctcaggtccatgtgccatcaattcagtaaatgcccaaagtcagctttagtggaacgt 660
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 295 attctcaggtccatgagccatcaattcagtaaatgcccaaagtcagcttcagtggaacgt 236

                                              
Query: 661 tggcacttgaatgttcaggcaaatacccagaatta 695
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 tggcacttgaatgttcaggcaaatacccagaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1093
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1083
Effective search space:   741855
Effective search space used:   741855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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