BAC Information

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BAC

Clone NameMSMg01-141C12
Chromosome2 (Build37)
Map Location 76,680,697 - 76,681,362
singlet/doubletsinglet
Overlap geneTtn
Upstream geneAgps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3
Downstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141C12.T7 (MSMg01no141_c12.b1)MSMg01-141C12.TJ (MSMg01no141_c12.g1)
ACCAG346106AG346107
length1,4421,245
length of high quality
(start - end)
241 (78 - 318)661 (128 - 788)
definitionCHROMAT_FILE: MSMg01no141_c12.b1 PHD_FILE: MSMg01no141_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:14 2005CHROMAT_FILE: MSMg01no141_c12.g1 PHD_FILE: MSMg01no141_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAACATTGGGCGCTATAGACTACTAAGGGAGAGGATCCGCGGAATTC
AGGGCTTTGCAATGTGCGCTATAAGGTTTATTGTTGAGCTATCTCTGTAA
AATCCATTCCGTATATTGGTGAATCAACCCCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCC
CTCTCTCCCTCTATCCTCTCTCCCTCTCTCCCTCTCCCTCTCCCTCTCTC
TCCTCCCCCAGCCCTCCCTGCCCCCAACCCCTGTGTGTGTGTGTGTGTGT
GTGTGTATTGTAGTAGGGGCTCTTTTTTTTGCGATAATCGTACTTTTCAC
TATTATATTTTTTTTATATATTATCTTCTTTTCTATTCTATCTTCTTTTT
TTTTTTTTAACTAGACATGATTTACTTATTTTTTTCTTGATAAAATCCCC
CCCTTTATTTAACCCCCCTCCTAATTTAATATATTATTTTGTATTTATAT
AATATTAATTTATCTTTTTTTTTTCTAATTATTTTAGTTATTATTATTTT
CTACTTTTTTTATAAATATACTTTAAACTCTATTTATTAGTAATATATAA
TTCTTTATTATTTTTCTTCTTTTACTTAATTTTAATTATCTCTTAATATA
TATTTAATATTTATTACTCTTTATTTACTCGTTATTATTAATTATAATCA
TTCTTATTATCTATTTTTTATATAATATTTCTATCATATTTATTTCTCTC
TTTAGTATTTTTTCCATCTTTACTTTATAATATATTCTTTAATACTTATT
TCTTTTTTTTAACAAATCTTTTTCTTATTTCACAATTTATTCTATTTTTT
CTAACCCTATATTACTTATTTCTATTTTTATTTTTTTTAAATACACAGTT
TATTGTTAAATTATTATTATTATATAAATACTTTTTATATTTACATTATT
ACTATGTTATTACCTTCATTCCTTAAAATCTATTTCTATTTATCTATATT
TTATTCTTTCTGTTTGGTATAACTCGTATTACTTATATTTTTTTTCGTTT
ATAATTATTATTTTTTATTTTTTATATATTTTATTTATGATTATTATTAA
CTTCTTTCTTAATTTTTTTTTATATTTCTATTATTTTTTATCTATTATCT
CTTTATTTTATCTATATATAACTTAAGACATTATGTTATATCTAGTATTT
TTTTATCTTTTTATTTTGGTTCATTTTTTTTTTCTTCTTTATTTTGTTAA
TATATTTTAATACTCTTATTATATACTATTTGTTACATCCTATATTATTT
AATAACTATATAGACTCTTTATTTTTTCTTTTTTCTTATTTTAATAATTA
TCTATAATCAATTTATAGAACTCTATTTTATCCTATTCTTATATATCTAT
ATATTACTCATTTATATACTCATTCATTGATCATTCTATCCA
NCCGGATCTTTTTNNACAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAATTACCTACTGACA
CTGTCAGACATCTAAGGAAACCCTTTACATGGCATTTTAAACCGCAATTA
GTCAGTTCTCTGCAACAGTTACTTTAAGGAAGAAGTGAAAGAAGACACAG
AACTTTTCAGAAAAAAAACATTACTGTGGGGCTAAGGAAGTGTCAGGGGT
TGCTATACCTTTTGCGGGGGGTGCCTCCGCTTTCTTAGGTACAGGAGTGG
GAGCTTCGGGTACTGCTTTCTTCACCACTTCAGGTGCTTAAAAGATATTT
TATGGACATGTTGACAAAAGTCACATGCAATGAACAGAACAACACCCCAT
TTACAAACTATAATTTTAGCAACACAAAACACTGATTTAGGAAGATGTTA
GCAACCTAAGTGATAAGAATCGCACCCCCAAAGGAGTGTCACCCCCAAAG
GAGTGTCACAGCAGCTCTGCCAAGATTTCAGTCTTCAGGGATACACGGTT
TAAGAATTATTCTTAAAAGCGAATGCTTTCATCACACACATAGATTGTTC
TCCAGCATTTGAACTGAAATCAAAATTGAGGACTGCAAACTAGGGGGAAG
GATTTAGTAACAGAAAATTGATAGTCAGATTGCAGGGAAGGAGGAAAAAC
TGGGGAGAAAGAAAGGCCCACAAAGCTTCAGCTACCAGGAGTGTGCACTC
TCCAGGCCTCATGGCTGTGCTAGCAGGAAAGTATATGGCTGAAGATTAGG
GCTAGACAGTTCTGAGCACCAAGGTTTTGGTGTGTCCAACTCATCAAAAT
GGCTGTACCTCTAGGTGGNAGAACCTCCTCCTCCTCCTCCTCCTCTTCCT
CCAATATCTCTTCTTCCTCTATGCTAAGGGGGCTCTTCTGGAATCTCTTC
TGAAGTGGGTTCTTCAGCCCTCTCATAAACTTGAAACAAAATATTTTTGT
AAATTATTTTTTTAAGTCCCCTGAATGTTAGATAGGTTAAAATAAAATTA
CCCCCTTTTGTGAAAAAACCCCCCGCTCTTTAAGGGGTCCGGAACCCTTT
TTATTTCTAAAAAAAAAAAAAAAAACCCCCGCCCTTTAAAAAATTCCCCA
GGGTTAAACGGGGAAGGGGCCCCCAAAAAAAAAAATTGTGAAATATTATT
TTTTATTAGGAAGTGGGGAAAAATTTTTTTTATCAATATTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_c12.g1 MSMg01no141_c12.g1 CHROMAT_FILE:
MSMg01no141_c12.g1 PHD_FILE: MSMg01no141_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:14 2005
         (661 letters)



>mm_chr2_76680497_76681562
          Length = 1066

 Score = 1164 bits (602), Expect = 0.0
 Identities = 648/670 (96%), Gaps = 13/670 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggcattttaaaccgcaattagtcagttctctgcaacagttactttaaggaagaagtg 60
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggcattttaaattgtaattagtcagttctctgcaacagttactttaaggaagaagtg 260

                                                                       
Query: 61  aaagaagacacagaacttttcagaaaaaaaacattactgtggggctaaggaagtgtcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaagacacagaacttttcagaaaaaaaacattactgtggggctaaggaagtgtcagg 320

                                                                       
Query: 121 ggttgctataccttttgcggggggtgcctccgctttcttaggtacaggagtgggagcttc 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ggttgctataccttttgcggggggtgcctccgctttcttagggacaggagtgggagcttc 380

                                                                       
Query: 181 gggtactgctttcttcaccacttcaggtgcttaaaagatattttatggacatgttgacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtactgctttcttcaccacttcaggtgcttaaaagatattttatggacatgttgacaa 440

                                                                       
Query: 241 aagtcacatgcaatgaacagaacaacaccccatttacaaactataatttta----gcaac 296
           ||||||||||||||||||||||||||||||||||||||||||||||    |    |||||
Sbjct: 441 aagtcacatgcaatgaacagaacaacaccccatttacaaactataa----acaaagcaac 496

                                                                       
Query: 297 acaaaacactgattta-----ggaagatgttagcaacctaagtgataagaatcgcacccc 351
           ||||||||||||||||     |||||||||||||||||||||||||||||||| ||||||
Sbjct: 497 acaaaacactgatttattttaggaagatgttagcaacctaagtgataagaatcccacccc 556

                                                                       
Query: 352 caaaggagtgtcacccccaaaggagtgtcacagcagctctgccaagatttcagtcttcag 411
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 caaaggagtgtcacccccaaaggagtgtcacggcagctctgccaagatttcagtcttcag 616

                                                                       
Query: 412 ggatacacggtttaagaattattcttaaaagcgaatgctttcatcacacacatagattgt 471
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 617 cgatacacggtttaagaattattcttaaaagcgaatgctttcatcacatacatagattgt 676

                                                                       
Query: 472 tctccagcatttgaactgaaatcaaaattgaggactgcaaactagggggaaggatttagt 531
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 677 tctccagcatttgaactgaaatcaaaattgaggattgcaaactagggggaaggatttagt 736

                                                                       
Query: 532 aacagaaaattgatagtcagattgcagggaaggaggaaaaactggggagaaagaaaggcc 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aacagaaaattgatagtcagattgcagggaaggaggaaaaactggggagaaagaaaggcc 796

                                                                       
Query: 592 cacaaagcttcagctaccaggagtgtgcactctccaggcctcatggctgtgctagcagga 651
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cacaaagcttcagctaccaggagtgtgcactctccaggcctcatggctgtgctagcagga 856

                     
Query: 652 aagtatatgg 661
           ||||||||||
Sbjct: 857 aagtatatgg 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1066
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1056
Effective search space:   687456
Effective search space used:   687456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)