BAC Information

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BAC

Clone NameMSMg01-141E10
Chromosome2 (Build37)
Map Location 108,407,050 - 108,407,334
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078
Downstream geneLOC668790, LOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141E10.T7 (MSMg01no141_e10.b1)MSMg01-141E10.TJ (MSMg01no141_e10.g1)
ACCAG346192
length1,2341,278
length of high quality
(start - end)
---285 (117 - 401)
definitionCHROMAT_FILE: MSMg01no141_e10.b1 PHD_FILE: MSMg01no141_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:29 2005CHROMAT_FILE: MSMg01no141_e10.g1 PHD_FILE: MSMg01no141_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAATTATTNNNNNAACATTGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCATGTCAACACACTTGTTTTGAATGCATCTCGTTTAAA
CTTTTCCGCCAGACCTGTTTAACCATGTAATTTTATCCTATATCCTTGTC
CAAAATTTTTTTTTACATACTTCACATCCTTATTCTCTCCCTCATCTCCT
TCATCCCTCTACCTAAATTTCTCCTCTCTCCCTTCTCTCATCTCTCTTTA
ACTTCTCTCCTCACTACACTTTTCTTTCCTCTTCCCCCTCTTAAATATCC
CTCTACTTATTTCTTTTCATCTCTTCTTCTCCAT
TTTTTGATCAAGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTATAAAGCCATAGGTTATTCATTGTGAATAT
CATAGGTGCCCCTAAAAAATAACTCTTGCCATTCAACCTTTTTCTTCAAG
ATATATTTTATTTTTGTTCATAAGTATCTAACACTGAAATATAAAAGAGT
ATTATTTACTGACATTTTAAATTTTAAGGAAATAAATTCAAAAGCTGCTT
GTAGAGAGAAAAATATGAAACCAAGAATGAAGGAAAACTAAATTAATGAG
ATAACCTGAGTGTAATTTTTGATAGCATACATTTATTTATGTTTATTCTC
ATGGGCCTATGGTAGAAGCTCATTTTTATCAAATACATATATGATAGGCT
ATTTTTTGTATTCAATGTGCAAAGATCAAATCAAGGTAATTAGTATTTCT
ATCATCTTAAGCATTTCTTATTTCTGTATGATGGAACTTTTCAGCTGCTC
TGTTTCAGTTCTTTATAATGTATATATTCAGTTGCTGGAAACTGTTTTGC
TGGATAACATTGGAATTCATTCCTTTTGTTTTTGGAATGTTTTTTCATGG
CATCCGTTTTTCACATTTCCCTGCCCTTAATGTGTGTACATTTATTTTGC
TTGATGCTTATTTACAGTGTCCATTACTTTGTTCTCTGCTTTTAAAATAT
TAACTGTTTTTCTTTCCACATAAGAGCATGTATTTATGTTATTTCTATCT
ACTGTTTAAATATTTTAAATACAATATTGTTTTTTATTGCTTACATTGGT
ATAATAAATTTTATATATATATTTATTCTAATTTTAAATCCTTTATTTTT
TATCTCATTTTATATCTATTCATATCTTCTTATTATTTTATTTTTATTTA
TATTATTATTATTTTTTTTCTTTTTCATTTTTTTTTATATATTTATTTTT
TTTTCTTATATTTTAATTAATTTTATTGTTCTTTTTTTTTACATTTTTAT
ATCTATCTTTCTTTTTTTACTTTTATTTTTCTTTTTTATTTCTTTACTTT
ATTAATCTCTTAGTTTAATTAATTTAATTCTATATTATCATATTAATATT
TCTTACTTTTTATTATTCCTTTTTATGATATTTATTTTAAAATGTCATAT
TATATTATTTGTATTTCAATTCTCTATTTTGATTTACATATTAACATTAC
TTTATTTTCTATTCCTCTCCTCCAATTATTTTGTTATTATTACTTGTATA
TTATTCTTATTTTATTATTTATCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_e10.g1 MSMg01no141_e10.g1 CHROMAT_FILE:
MSMg01no141_e10.g1 PHD_FILE: MSMg01no141_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:30 2005
         (285 letters)



>mm_chr2_108406850_108407534
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataactcttgccattcaacctttttcttcaagatatattttatttttgttcataagta 60
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataactcttggcattcaaactttttcttcaagatatattttatttttgttcataagta 260

                                                                       
Query: 61  tctaacactgaaatataaaagagtattatttactgacattttaaattttaaggaaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaacactgaaatataaaagagtattatttactgacattttaaattttaaggaaataaa 320

                                                                       
Query: 121 ttcaaaagctgcttgtagagagaaaaatatgaaaccaagaatgaaggaaaactaaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaaaagctgcttgtagagagaaaaatatgaaaccaagaatgaaggaaaactaaattaa 380

                                                                       
Query: 181 tgagataacctgagtgtaatttttgatagcatacatttatttatgtttattctcatgggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tgagataacctgagtgtaatttttgatagcatacatttatttatgtttattctcatgagc 440

                                                        
Query: 241 ctatggtagaagctcatttttatcaaatacatatatgataggcta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatggtagaagctcatttttatcaaatacatatatgataggcta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)