BAC Information

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BAC

Clone NameMSMg01-141F13
Chromosome2 (Build37)
Map Location 99,315,886 - 99,316,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702, LOC100042907, LOC241572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141F13.T7 (MSMg01no141_f13.b1)MSMg01-141F13.TJ (MSMg01no141_f13.g1)
ACCAG346242AG346243
length1,2661,259
length of high quality
(start - end)		658 (93 - 750)729 (90 - 818)
definitionCHROMAT_FILE: MSMg01no141_f13.b1 PHD_FILE: MSMg01no141_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:38 2005CHROMAT_FILE: MSMg01no141_f13.g1 PHD_FILE: MSMg01no141_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATATTTCTTNTNNTACAGTGGGCGCTNXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAAGAAAATATATAGGCCCTTTTAGTAGATAAGTGG
TTTATCCCTTCCCTAAAACACTCCTAAGTATATATAAAAACTGCCTTAAA
ATGTAATTTAAAAAATTAATGAAACAAATCTACATAATGACAATTCTTTC
TCGAGATCTATGGAGTTTCATTTGAACAGTCTGGTTCTGTAGGCTTTTGT
CTCTCTGTACTCTTGTCCAGATGTACGAACAGCTGGTACTCAGCCTCCTA
GGACACTCTGGCCATAAACCAGTCCTAGGCAGTCAGAGAGTGAGGCCAGT
CTTGCAGAATGTGTGAAAAAAGGAAGAAGATCTGATACATGGGTGGGAGA
GTACCACAGAAGCATATAAGCCATGACCTAATGTCAAGTGTTGCCACTGA
TATACAGAACCTCTTATAGATGCCTTAGATTTGTGAGTTGAACATGGAGT
CCTTGTGCTATCAGGACACTAGAAAAGGCTTACTGGCAGAAAAGGGAAAT
CAATGTTTTAAGGGAGGATTTAAAGGAACACAGGTGGTACACAGCATAAA
AGGAAAATAATGGGGGTATGTTTCATTGGGGAAGGTATAGAAAGTCAGAG
CAGAACACTGGATGGGAAAAGGAGTAACACTAAGGATTTTGAAGAAGCCA
TGAGGAAGCATATTATTTTATAATTTCCAACTTCTCTATATTTTATTTTC
ATATGAGAATTTAATTGGAGTTACCCTACACAAAGTTTGCTAGTTTAAAA
GTACAACACTAGGTGTGGAATAAGTCCACTGAAATTGTTGGTCATGACAA
TCTCAACTATTCTCCAAACAATACAGATTATTGCCATAGTTCTTGAATGT
CCTTCNAAATTATATAGGAATATTATCCTATTAAGAATGCACAATCTTTT
GGCTAAAAAATATTCAGAAATTCCGGGAAGTTATTATCATGATGCATCCT
CCCTTACTTTTAAAATTAAATGGAAACGTTTTTAATCTGGCTTAGGGAAA
ATTTATCTGTTAGTTATTACCCCCTAATAAATCCTTTTAATCCCCCTAAT
AATATTGTTTATCCTATTTCTTCTAGATTTAATTCATTGTTTCAGATTTT
GTACTCTTGACTCATCCTTCTTCTTTCTTTCTACCATAAAATATATCTCT
TATATTAACTTAATCTCTGTTTAATTAAATATGTAGCTAAAATTTTATTT
TCCTTGTGTCCTTTTC

NNCCCTTTTTTTTTTNTAGCATGGATGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAAAACACCAGTCAGAA
TGACGAAGATCAAATATTCACCCTTCAGCAGATGCTGGCAACGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGAGATTGCAAGCTGGTACAATC
ACTCTGGAAATCTGGTGGTTCCTCAGAAAATTGGACATAGTACTACAGGA
GGATCCAGTTATACCTCTCCTGGGCATATATTCAGAAGATGTTCAAACTG
GTAATAAGAACACATGCTCCACTATGTTCAAAGGACCCTTATTTATAATA
TCCAGAAGTTGGAAAGAGCCCAGATGTCCCTCGACAGAGGAATAGATACA
GAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTCTTAAAAATA
ATTAACTTATGAAATTCCTAGGCAAATGGATGGATCTGGAGGGTATCATC
CTGAGTGAGGTAACCCAATTACAAAAGAATTCACATGATATGCACTCACT
GATAAGTGGATATTAGCCCAAAAGCTTAGAATACCCAAGATACAATTTCC
AAAACACATGAAACTCAAGCAGAAGGAAGACCAAAATGTGGATACCTCAC
CCTTTCTTAAAATTGGGAACACTCGTAGGCTTTGGATGAAGACTTAGAAC
TCTCATCTCTGCATGTGCCATGCCTTCCTGTTTGCTGCCCTGCTCCCACC
TTGATAATGGTGGACTGAACCTCTGACCTGCAAGCCAGCCCCATTTAAAT
GTTGTCCTTTGTAAGACTTGCCTTGGTCATGGTATCTGTTCCCAGCAGTA
AAACCCTAAGACAGAATTTGGTATCAGGGACAGGTGTATTGCTGTGATAT
GTGACCATGCTTTTGTTTGGAAGATGTGAATTTGGGAACTTTGGATTTGA
AAAGAAGGGAATGTTTTTCCTGTGGTTTAATGTCCCCCCTGGAATGAAAT
ATTAACACTTTGCCCTTGTAATTGTTTTTTTTTTTGGGTCCCCTTCTCCT
CTAATTTTTTTGTGTTTCTTTTTCTTTATTTGTTTAAATCCTTTTTTTTG
TATATNTTTTGCAAATCATCGTGTTTTATTTCTCTCTTTTTTTTTATATT
TCTTAAATTTTATTCTTTCTAATTCTCTTATCTTTTATTTTTCTTATCTT
CTTTTCTTAGAATTTCTCTTTTATCTCCTCTTTTCCTTCATTCTTTTTCT
TTTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_f13.b1 MSMg01no141_f13.b1 CHROMAT_FILE:
MSMg01no141_f13.b1 PHD_FILE: MSMg01no141_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:38 2005
         (658 letters)



>mm_chr2_99315686_99316742
          Length = 1057

 Score = 1052 bits (544), Expect = 0.0
 Identities = 631/662 (95%), Gaps = 9/662 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagtggtttatcccttccctaaaacactcctaagtatatataaaaactgccttaaaat 60
           ||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||
Sbjct: 857 ataagtggtttatcccttccctaaaacacttttaaatatatataaaaactgccttaaaat 798

                                                                       
Query: 61  gtaattt---aaaaaattaatgaaacaaatctacataatgacaattctttctcgagatc- 116
            |||  |   |||||||||||| |||||||||||||||||||||||||||||||||| | 
Sbjct: 797 ataa--tgaaaaaaaattaatg-aacaaatctacataatgacaattctttctcgaga-ca 742

                                                                       
Query: 117 tatggagtttcatttgaacagtctggttctgtaggcttttgtctctctgtactcttgtcc 176
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 tatggagtttcatttgaacactctggttctgtagacttttgtctctctgtactcttgtcc 682

                                                                       
Query: 177 agatgtacgaacagctggtactcagcctcctaggacactctggccataaaccagtcctag 236
           ||||| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct: 681 agatgcacgaacagctggtgctcagcctcctaggatagtctggccataaaccagtcctag 622

                                                                       
Query: 237 gcagtcagagagtgaggccagtcttgcagaatgtgtgaaaaaaggaagaagatctgatac 296
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 gctgtcagagagtgaggccagtcttgcataatgtgtgaaaaaaggaagaagatctgatac 562

                                                                       
Query: 297 atgggtgggagagtaccacagaagcatataagccatgacctaatgtcaagtgttgccact 356
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 561 atgggtgggagagtaccacagaagcacagaagccatgacctaatgtcaagtgttgccact 502

                                                                       
Query: 357 gatatacagaacctcttatagatgccttagatttgtgagttgaacatggagtccttgtgc 416
           ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
Sbjct: 501 gatatacagaacctcttatagatgccttagatttgtgagtttaacttggagtccttgttc 442

                                                                       
Query: 417 tatcaggacactagaaaaggcttactggcagaaaagggaaatcaatgttttaagggagga 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcaggacactagaaaaggcttactggcagaaaagggaaatcaatgttttaagggagga 382

                                                                       
Query: 477 tttaaaggaacacaggtggtacacagcataaaaggaaaataatgggggtatgtttcattg 536
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 tttcaaggaacacaggtggtacacagcataaaaggaaaataat-ggggtatgtttcattg 323

                                                                       
Query: 537 gggaaggtatagaaagtcagagcagaacactggatgggaaaaggagtaacactaaggatt 596
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggaaggtatagaaagacagagcagaacactggatgggaaaaggagtaacactaaggatt 263

                                                                       
Query: 597 ttgaagaagccatgaggaagcatattattttataatttccaacttctctatattttattt 656
           ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct: 262 ttgaagaagccatgaggaagcatattattttataaattccaactcctctatattatattt 203

             
Query: 657 tc 658
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1057
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1047
Effective search space:   678456
Effective search space used:   678456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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