BAC Information

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BAC

Clone NameMSMg01-141I17
Chromosome2 (Build37)
Map Location 7,641,725 - 7,642,492
singlet/doubletsinglet
Overlap genenone
Upstream geneCugbp2, LOC100040659, LOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I17.T7 (MSMg01no141_i17.b1)MSMg01-141I17.TJ (MSMg01no141_i17.g1)
ACCAG346389AG346390
length1,0821,253
length of high quality
(start - end)		739 (88 - 826)319 (85 - 403)
definitionCHROMAT_FILE: MSMg01no141_i17.b1 PHD_FILE: MSMg01no141_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:04 2005CHROMAT_FILE: MSMg01no141_i17.g1 PHD_FILE: MSMg01no141_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTCTTNTNNTTACACTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTATACCAGCACAGGCTTCCTTAGAAGACCTTATATAAA
AAGAAGTAAACAAGTGATCCCCGTCTGTCTGAAAATATCCTTAAATTAAT
TGAGAGACACAATGCTAACTTTCCATAAGGGTAAAGCATACAACTCAGTC
TAAAACTGAGTCTAAAACACACCCACTTGTGTGTGCATTTATATATGTAT
ATTTATGATCATATATATATATATGAAAGGTATATTCTGTAATATCCAGA
TAGCATATTATTTATCACATAATGATTATATAAATATGTTCAATAAAATA
ATACATGTATTTTGAAAAATAATCTATATCCGAATGACAAATAAATATAC
ACAGAAATCAACAATTTGATGATTAAAATAAAAATCTCCATAGATAGTAA
GATAACAAGCTTATTTTTAAAAATCTAGTAATCTACTCTTACTCCTCTCT
TGCTCCCTTGCTTTTCCCTTCCCCCCCCTCTCCCCATTCTCTTTTCCCTT
TCCTCTCTTTCCTACCCTCACTTTCTCTCTCTCTCTCTTTCTCTCTCTCT
CATTCTGTATTTCTCTGCCTCTGCTACATTCTTAACTCCCCTCCCCATGC
CCTGAATGATCTATATAATGATATATATATATATATATATATAATCTATC
TATCTATCTATCATCTATCGATCTATCTATATATCAATATAACTATTTGG
AATGTGTATAATAAAATGGAAGAAAAGAAATTTTGAAGAATCTGTAACCC
TTGTATCCATTGCAACTTTTTGTGAGAACTCTGAGCATCTCCATGGAGCA
AATAGCCTTGTCTTTTAAGTACATTTTTCAGTACAAGGAACCTACAGTAT
TAAATTAGTCCCTTAAGGGAAGAATAACCTGGGGGCCATAACTTTCTAAT
GGGCCCAATTAAATAATAACCCCCCTTTTTTTTTTATGGGGAAAACCTTT
TTTGTGGGTTAAAAAGAGAGGTGGGAGATATTTTCTTTTTTTTATAGGAA
AGCCCCTTTTTTTTATTATTTTGGGTGTCTCT

NTTTTTTTTTTTTACCATGGTACCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATCTTTTTACCTCTGTGCTCCAT
TTTTTTAAATTGGGTTCCTGTGGTTGTTGGTGTTTAACCCCTTGAGTTCT
TTGAGAATTTTGGGTATTATTTCTCTGTCAGATGNAGAGTTGATGATGAT
GCTTTCTCAGACTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTACAGAA
GCTTTTCAGTTTCATGAGGTCCCATTTATGAATTGTTGATATTAAAACTT
GAGCCACTGGTGTTCTTTTCAGGCAATTGTCTCCTATAGCATTGCGTATT
CTCAACTTTCTCTTCTATGACATTTATTATATCTGTTACCATGTTGAGGT
CCTTGTTTTTTTTGGACTTAAGTTTTGCGCAAGATGAATGTGGCTCTATC
TCCCTCCTTCTCCATGTATACATGTAGGCATCCAGTTAAACCAGTACATT
TGTTGAATATGTCTTCTGCTTTCCTTTGTACGCCTTTGTCTTTTAACCCT
TTTTCATCTTTCCATTATATGCTTGCATTTATTTCTGTGTCTTTTATTTG
AATCCCCTTGATCCCTCGCTATTTTTTCTCTACTCTTACTTTGTTCCTTT
TTTTTCTATCCCTCCCTTCTCCTATTTTCAATCTCCCATTCTTTCCTTTC
CTCTATTTTTCTTTTTTGTTCCCTATTCTTTTTGTCCTCTTTATTCTTCT
TTTTTCTTTCTTTCTATTTTTCTGTTCTTCTCTCTCTCTCTTTCTCTTTT
TTTCCTCCACTTAACCTTTCTTTCTTCTTTTATTTCTCTTCTTTTTCTTC
TTTCCTTTCTTCTCTTCTTTCCTTTCTTTCTTCCCTTTTTTTTTTTCTTC
TTTCCCCTTCTCTGTCTCTTTCTTTTTTCCTTTTTCCTTCTTCCTCCTTT
TCTCTTTTTTCTTTTTTTCCCCTTCTTTCTCTTATTCTCTCTCTTCTCTT
ATTCTCTCCTCGTCTCTCTTACCCTTTCCCTTCCCTATTCTATACTCTTT
CCCTCTTTTCTTTCTTACTTATCCTTTTTCTCTCCTTTCTTTTTCTTTTT
TATTTCATCTCTTTTCATTTTTTTTCTTCTTCTTCTACTTTTTCCTCTCT
TCTTTCTTCTAATCCTCATATTACTCTCATATCCTCCTTTCCTCTCTCTC
CTTACTCTCATATCACCTTCNCTTCCTACTCTTTTTTTATTCTACTATTC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i17.b1 MSMg01no141_i17.b1 CHROMAT_FILE:
MSMg01no141_i17.b1 PHD_FILE: MSMg01no141_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:04 2005
         (739 letters)



>mm_chr2_7641525_7642663
          Length = 1139

 Score = 1309 bits (677), Expect = 0.0
 Identities = 732/769 (95%), Gaps = 31/769 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaccttatataaaaagaagtaaacaagtgatccccgtctgtctgaaaatatccttaaatt 60
           |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||
Sbjct: 201 gaccttatataaaaagaagtaaacaagtgatctcagtctgtctgaaaatatctttaaatt 260

                                                                       
Query: 61  aattgagagacacaatgctaactttccataagggtaaagcatacaactcagtctaaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgagagacacaatgctaactttccataagggtaaagcatacaactcagtctaaaact 320

                                                                       
Query: 121 gagtctaaaacacacccacttgtgtgtgcatttatatatgtatatttatgatcatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtctaaaacacacccacttgtgtgtgcatttatatatgtatatttatgatcatatata 380

                                                                       
Query: 181 tatatatgaaaggtatattctgtaatatccagatagcatattatttatcacataatgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatatgaaaggtatattctgtaatatccagatagcatattatttatcacataatgatt 440

                                                                       
Query: 241 atataaatatgttcaataaaataatacatgtattttgaaaaataatctatatccgaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atataaatatgttcaataaaataatacatgtattttgaaaaataatctatatccgaatga 500

                                                                       
Query: 301 caaataaatatacacagaaatcaacaatttgatgattaaaataaaaatctccatagatag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaataaatatacacagaaatcaacaatttgatgattaaaataaaaatctccatagatag 560

                                                                       
Query: 361 taagataacaagcttatttttaaaaatctagtaatctactcttactcctctcttgctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagataacaagcttatttttaaaaatctagtaatctactcttactcctctcttgctccc 620

                                                                       
Query: 421 ttgcttttcccttcccccccctctccccattctcttttccctttcctctctttcctaccc 480
           |||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 ttgcttttcccttccccctc-tctccccattcttttttccctttcctctctttcctaccc 679

                                                                       
Query: 481 tcactttctctctctctctctttctctctctctcattctgtatttctctgcctctgctac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcactttctctctctctctctttctctctctctcattctgtatttctctgcctctgctac 739

                                                                       
Query: 541 attcttaactcccctccccatgccctgaatgatctatataatgatatatatatatatata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 attcttaactcccctccccatgccctgaatgatctatataatgatatatatatatatata 799

                                                                       
Query: 601 tat--------------ataatctatctatctatctatc----------------atcta 630
           |||              ||||||||||||||||||||||                |||||
Sbjct: 800 tatttatctatctatatataatctatctatctatctatctatctatctatctatcatcta 859

                                                                       
Query: 631 tcgatctatctatatatcaatataactatttggaatgtgtataataaaatggaagaaaag 690
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 860 tcgatctatctatatatcaatataactatttggaatgtgtatagtaaaatggaagaaaag 919

                                                            
Query: 691 aaattttgaagaatctgtaacccttgtatccattgcaactttttgtgag 739
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 aaattttgaagaatctgtaacccttgtatccattgcaactttttgtgag 968


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 739
Length of database: 1139
Length adjustment: 10
Effective length of query: 729
Effective length of database: 1129
Effective search space:   823041
Effective search space used:   823041
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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