Query= MSMg01no141_j18.b1 MSMg01no141_j18.b1 CHROMAT_FILE:
MSMg01no141_j18.b1 PHD_FILE: MSMg01no141_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:12 2005
(690 letters)
>mm_chr2_48493481_48494567
Length = 1087
Score = 1237 bits (640), Expect = 0.0
Identities = 678/692 (97%), Gaps = 5/692 (0%)
Strand = Plus / Minus
Query: 1 actgagatacaaatcaagtcaagcttatgcccggcataagtagtaaaaccaagacattgc 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 849 actgagatacaaatcaagtcaagcttatgcagggcataagtagtaaaaccaagacattgc 790
Query: 61 ctgtgtctgtgttattccccatccttatgaactaataaggaatttaactccttactgtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctgtgtctgtgttattccccatccttatgaactaataaggaatttaactccttactgtac 730
Query: 121 tgtgggaagatccaagacaacaaatgaaaccagataaaggccactcagagattttcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgtgggaagatccaagacaacaaatgaaaccagataaaggccactcagagattttcagat 670
Query: 181 gggcagggggagagtcaagcaggatgctggcatccagtgaatcgtagctgatgaactgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gggcagggggagagtcaagcaggatgctggcatccagtgaatcgtagctgatgaactgtc 610
Query: 241 aagggtggggagaggcgacaactgtctgggtaactaagagccgccatacagcatagcacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aagggtggggagaggcgacaactgtctgggtaactaagagccgccatacagcatagcacc 550
Query: 301 cccatttgcactatttctagcattattttttctagtcctcaagatgaagaaggtgagaat 360
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 549 cccatttgcactatttctagtattaaattttctagtcctcaagatgaagaaggtgagaat 490
Query: 361 tactttccttcacaattatgctacttgaaagagtagttgccactctctgctgtcatgcct 420
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 489 tactttccttcacaattatgctacttgaaagagtagttgccgctctctgctgtcatg--- 433
Query: 421 tctctctgaaggtttagagcttcagactgactcccagcctgtgccttggccaaggagtga 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tctctcttaaggtttagagcttcagactgactcccagcctgtgccttggccaaggagtga 373
Query: 481 ctcggtggccactaccagtgggttctgtgtagtccttactgctttgtgttaaatgcttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctcggtggccactaccagtgggttctgtgtagtccttactgctttgtgttaaatgcttct 313
Query: 541 accttttattaaacataccttttgtagacccactcactctgggctcctctctttgtctct 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 312 accttttattaaacataccttttgtagacccactcactctgggctcctccctttgtctct 253
Query: 601 atatttatagaagcagaatcctatggccatttcaaatgtctctgcggtttccttctctct 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 252 atatttatagaagcagaatcctatggccatttcaaatgtctctgcggtttccctctctct 193
Query: 661 ctctct-t-tctctctctctctctcaactttg 690
|||||| | |||||||||||||||||||||||
Sbjct: 192 ctctctctctctctctctctctctcaactttg 161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1087
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1077
Effective search space: 732360
Effective search space used: 732360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_j18.g1 MSMg01no141_j18.g1 CHROMAT_FILE:
MSMg01no141_j18.g1 PHD_FILE: MSMg01no141_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:12 2005
(756 letters)
>mm_chr2_48406426_48407578
Length = 1153
Score = 1309 bits (677), Expect = 0.0
Identities = 734/755 (97%), Gaps = 5/755 (0%)
Strand = Plus / Plus
Query: 3 tctaaaagaatatggaatattcttgaatatatgggccaattctaagtaagacaaaaaaac 62
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 203 tctaagagaatatggaatattcttgaatatatgggccaattataagtaagacaaaaaaac 262
Query: 63 gcacattaagaggtgtgttgtctttatgaagaaagaatttgctgatttcaacaaatttaa 122
| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 gtaaattaagaggtgtgttgtctttatg----aagaatttgctgatttcaacaaatttaa 318
Query: 123 tacgctgaattgaagaccaagggtcgctctcccatatgtatttactcaataaattctggt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tacgctgaattgaagaccaagggtcgctctcccatatgtatttactcaataaattctggt 378
Query: 183 ttaagaataaagaattaatgaatga-ttttttttagcaacttacaaattgtgatccagaa 241
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 379 ttaagaataaagaattaatgaatgatttttttttagcaacttacaaattgtgacccagaa 438
Query: 242 aacataaatatttttgtgccatcacacctttagaacctgagccccctattgcaatattaa 301
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 439 aacataaatatttttgtgccatcacacctttagaacctgagccccttattgcaatattaa 498
Query: 302 tttgggtgtctatctttgcccccttgttcccaaataattgaatgagggttcctatgctta 361
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attgggtgtttatctttgcccccttgttcccaaataattgaatgagggttcctatgctta 558
Query: 362 ttctagcccactttagctccaaacgaattgacacagatacctgatagatttattaagaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttctagcccactttagctccaaacgaattgacacagatacctgatagatttattaagaaa 618
Query: 422 ctgacagcattattactggatagagattcatctattctaacctaatctaattagttaggc 481
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgacagcattattactggacagagattcatctattctaacctaatctaattagttaggc 678
Query: 482 tgcctatcacccaccacatggttcttttccttgaatctgagtgttgccttggctttctct 541
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 679 tgcctatcacccaccacatggttcttttccttgaatctgagtcttgccttggctttctct 738
Query: 542 gctccatgtttgtcctcatggagactcccttaatgacctgctcatggcaactcctcatgg 601
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 739 gctccatgtttgtcctcatggagactctcttaatgacctgctcatggcaactcctcgtgg 798
Query: 602 cccatgacctgcctcatggtgacttctttctcctcctggtccctctacatgatctctcca 661
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 799 cccatgacctgcctcatggtgacttctttctcctcctggtccctccacatgatctctcca 858
Query: 662 catcttcttctcttcctttcctctcctcctttctggtctctttgggaccccctgacaaag 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 859 catcttcttctcttcctttcctctcctcctttctggtctctttgggaccccctgacaggg 918
Query: 722 atcagaagtccagctctatctcttctacccagcta 756
|||||||||||||||||||||||| ||||||||||
Sbjct: 919 atcagaagtccagctctatctcttttacccagcta 953
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 756
Length of database: 1153
Length adjustment: 10
Effective length of query: 746
Effective length of database: 1143
Effective search space: 852678
Effective search space used: 852678
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
