BAC Information

Click to search

BAC

Clone NameMSMg01-141M15
Chromosome2 (Build37)
Map Location 89,897,210 - 89,897,912
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140
Downstream geneOlfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141M15.T7 (MSMg01no141_m15.b1)MSMg01-141M15.TJ (MSMg01no141_m15.g1)
ACCAG346571AG346572
length1,1281,241
length of high quality
(start - end)		700 (83 - 782)714 (92 - 805)
definitionCHROMAT_FILE: MSMg01no141_m15.b1 PHD_FILE: MSMg01no141_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:36 2005CHROMAT_FILE: MSMg01no141_m15.g1 PHD_FILE: MSMg01no141_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTCTTTTNTNACATTGGGCGCTAAGACTCCATAGGGAGAGGATCCG
CGGAATTCAATGCTATTGTTTAAACCTATAAAAATAATCATTAACTTTAA
AAAGTTTTCAACTGCCTATATATCAAAAAATACCCCCCCCCAACCAAACC
CACTTATGGTGTAAAGATTGATTTCTTTATTAATTACACCAAAATTAAAA
TTAACCCTTATTTTAACACTGAGAATTGAGATAACACAAGGAAGTCTACC
TAGATTTGATTAATAAGGCTCTCCTGACCATCTTTAATATATATATAAAA
CTTCATTTTTTTGCTTTTTGAGACCCCTGATTTATCCTATTTTAATGATG
TATATTAATGGATTGAAACACAAGGATAGGATGGATTTGGAGGCAGAAGA
CATGTGCATCCATTCTAGAATTGTGTAGACCACAAGTTTTTGATCTCTTG
TCAAGGTGGCACAGAGTAACATCTTAGTGAGTGACTACAGATACCTTCTT
GCTGTGTGGATCAGTGATAACAGCAACCACTCGATAGAAGATTTTAATGA
AAAACAGGAAGAATGGATGCCAGCTGTTCTGTAAGAGTTGAATTAGTTCA
GAAATCTGCCAGGAGGATTATTTTTCCCAGCATACTGGGTCTCANATGCT
CCAGTTCTTAGATTTGACCTGCTTACAGCTGTGGCTTTCTTTCAGTGAAG
TCTTTCTCTTCACTGTAAACTTTTTTTTTTTAACATTTTTTTTGTTTATT
AGGTATTTTCTTCATTTACATTCCCAATGCTATCCCAAAAGTCCCCCATA
CCTCACCCCCGATTCCCTTTAACCACCCATTCCCACTTTCATGGCCCCTG
TGGTTTCCCCCTTACTGAGGCATATAAATGTTTGTTAATATCAATGTTCT
TTCTCTTCCCTATAGATGGTTTCAATTTTACTCTGCTTTAAGATATTAAA
TTTCCTTTTGGATCATCGTCTCCTTTTTAATTTATTTTTTCTCTTCTTTT
TTATTTTTTTTATAATCCTTCTTTAATCATCCTTGTGCTAATTTATTCTT
TATTAAATCTTTTTTCTTTTCGGTGCTTTTTTGGTCTATCCTTTCTTTTT
NTGATCTTTAATTGTTTTTATACTTATT

NNTTCTTTTTTTNTTTTAACATGTGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGAGGACTCTCA
AATGGAAGAGAAGCATTTAAAGCAATGTTCAAAGTCCTTAGCCCCATGGA
AATGAAATCAAAATGAACCTGAGATTCCATGGCACACCAATCAGAATGGC
TAAGATAAAAAACTCAGGTGACAGAAGATACTGGCAAGGATGTAGAGCAA
AAGGAACACTCCTCCATTGCTGGTGGGAATGCAAACTTGTCTAGCCACTC
TGGAAATCAATCTGGTGGTTTCTCACAAAACTGGGAAAAGTTCTACCTGA
AGACCTAGCTATACCACTGCTGGGCATATACCCAGAAGATGTTCCACAAT
ACCACAAGGACACATGATCTACTAAGTTCATAGCCAAAAACTGGAAACAA
CAGATGCCCCTTAACCAAAGAATAGATAGAGAAAATGTGGTTCATTTACA
CCATGGAATCCTACTGAGCTATTAAAAACAAAGGCATCATGAATTTTGCA
GGCAAATGGATAGAACTTGAGAATATCACCCTGAGTGAGGTAACCCAGAC
CCAAAAGAATATGCATGATATGTACTCACTTATAAGTGGGTATTAGCCAA
AATGTACAAGATACCCATGCTACACTCCACAGACCCAAAGAACCTAAACA
AGAAAGAAGGCCCAAGTGAGGAAGCTTGAATCTCACTTAGAAGAGGGATA
AAATAGTCACAGGAGGCAAGAGAGAGAGAACTGGGTAGAAGATGCCCTTC
TTTTTCAAACTTTCATTTTAGTACAAAGAGAGGAGTCAGCACAACAAAGG
AGCCTCTGCATCAAGGAGAAAAACAGAAGAATCCCTGTAAGCCAAAAAAA
AGATGTTACCCACCTAAAAAGCAAAAGGAAAAGCCAGAGAAAGTAGGAAA
CAATTCAATGCCAGCCTAAGTCCCTGAATTGGAATGGGGAAAAGAAACTG
AACTACCCCCACCAACTTTTAAAGTCGTCAGCAAAACCAAAATTTTTAAT
TGGCGGGAAAAAACCTTAATCCCCAAAAAATTTTAAATTTAATCCCAAAA
TTTTTGCCAAAAAGGGACCCCCTCTTACCAACTTGTTAATTTTTAAAACC
TAATTTTAATAGTTCCCCCCCCACAATTTCCTAAGGGTACNCCTTAAAAA
AATTTCATTGTTTAAAATACTCCCTCTAGTGATAGATATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_m15.b1 MSMg01no141_m15.b1 CHROMAT_FILE:
MSMg01no141_m15.b1 PHD_FILE: MSMg01no141_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:36 2005
         (700 letters)



>mm_chr2_89897069_89898171
          Length = 1103

 Score = 1292 bits (668), Expect = 0.0
 Identities = 693/703 (98%), Gaps = 3/703 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aataatcattaactttaaaaagttttcaactgcctatatatcaaaaaatacccccc---c 57
           ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||   |
Sbjct: 844 aataatccttaactttaaaaagttttcaactgtctaaatatcaaaaaataccccccaaac 785

                                                                       
Query: 58  ccaaccaaacccacttatggtgtaaagattgatttctttattaattacaccaaaattaaa 117
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 caaaccaaacccacttatggtgtaaagattgatttctttattaattacaccaaaattaaa 725

                                                                       
Query: 118 attaacccttattttaacactgagaattgagataacacaaggaagtctacctagatttga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 attaacccttattttaacactgagaattgagataacacaaggaagtctacctagatttga 665

                                                                       
Query: 178 ttaataaggctctcctgaccatctttaatatatatataaaacttcatttttttgcttttt 237
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 664 ttaataaggctctcctgaccatctttaatatatatataaaacttcattcttttgcttttt 605

                                                                       
Query: 238 gagacccctgatttatcctattttaatgatgtatattaatggattgaaacacaaggatag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gagacccctgatttatcctattttaatgatgtatattaatggattgaaacacaaggatag 545

                                                                       
Query: 298 gatggatttggaggcagaagacatgtgcatccattctagaattgtgtagaccacaagttt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gatggatttggaggcagaagacatgtgcatccattctagaattgtgtagaccacaagttt 485

                                                                       
Query: 358 ttgatctcttgtcaaggtggcacagagtaacatcttagtgagtgactacagataccttct 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ttgatctcttgtcaaggtggcacagagtaacatcttagtgagtgactacagataccttct 425

                                                                       
Query: 418 tgctgtgtggatcagtgataacagcaaccactcgatagaagattttaatgaaaaacagga 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgctgtgtggatcagtgataacagcaaccactcgatagaagattttaatgaaaaacagga 365

                                                                       
Query: 478 agaatggatgccagctgttctgtaagagttgaattagttcagaaatctgccaggaggatt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 agaatggatgccagctgttctgtaagagttgaattagttcagaaatctgccaggaggatt 305

                                                                       
Query: 538 atttttcccagcatactgggtctcanatgctccagttcttagatttgacctgcttacagc 597
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 304 atttttcccagcatactgggtctcaaatgctccagttcttagatttgacctgcttacagc 245

                                                                       
Query: 598 tgtggctttctttcagtgaagtctttctcttcactgtaaactttttttttttaacatttt 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 244 tgtggctttctttcagtgaagtctttctcttcactgtaaactttttttttttaacttttt 185

                                                      
Query: 658 ttttgtttattaggtattttcttcatttacattcccaatgcta 700
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttttgtttattaggtattttcttcatttacattcccaatgcta 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1103
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1093
Effective search space:   754170
Effective search space used:   754170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |