Query= MSMg01no142_c07.b1 MSMg01no142_c07.b1 CHROMAT_FILE:
MSMg01no142_c07.b1 PHD_FILE: MSMg01no142_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:25 2005
(680 letters)
>mm_chr2_129283591_129284671
Length = 1081
Score = 1222 bits (632), Expect = 0.0
Identities = 669/682 (98%), Gaps = 3/682 (0%)
Strand = Plus / Minus
Query: 1 taaatgatgtttcctgcttctgtatgacctgtgatacattgcctactaccctctctaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 taaatgatgtttcctgcttctgtatgacctgtgatacattgcctactaccctctctaagg 822
Query: 61 agctcaagtggagagaagatgcaaggacctgcagttgatccgagactcctgctcttcact 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 821 agctcaagtggagagaagatgcaaggccctgcagttgatccgagactcctgctcttcact 762
Query: 121 cgccctcctccatccaccacagatgtgctctccctgcacactgcacacagact--tggat 178
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 761 cgccctcctccatccaccacagatgtgctccccctgcacactgcacacagacttgtggat 702
Query: 179 tgtttagcgatatttcagactcaagatactgaatctcaaatgatctcttcttacaaccaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtttagcgatatttcagactcaagatactgaatctcaaatgatctcttcttacaaccaa 642
Query: 239 aaggcaatttaatgatgaggaaatgaatgttttttctgtctctggccatggtcaatcctt 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 641 aaggcaatttaatgatgaggaaatgaatgttcactctgtctctggccatggtcaatcctt 582
Query: 299 aattttccagttctgactaccaactagaatttctggaagcataatttaattttaacagac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aattttccagttctgactaccaactagaatttctggaagcataatttaattttaacagac 522
Query: 359 acaaaacttgtattactggactgttgaaaagaatttttcctatcttgaaatgggatttaa 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acaaaactcgtattactggactgttgaaaagaatttttcctatcttgaaatgggatttaa 462
Query: 419 aacagtataaaacacctctagattcactataacattttgtaaaatataacatcttgtcca 478
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 461 aacagtataaaacacctctagattcattataacattttgtaaaatataacatcttgtcca 402
Query: 479 tatcttcttcaatttttttttttaatattgccccgaatttgctggttttctttcttaatc 538
|||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 401 tatcttcttcaagtttctttttta-tattgccccgaatttgctggttttctttcttaatc 343
Query: 539 atggctttatactgttatgacataagcataacctttaaacagcatatagtgctttctggt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atggctttatactgttatgacataagcataacctttaaacagcatatagtgctttctggt 283
Query: 599 tttattctttataaaatctatgatatcatatgtaacattttgaaactttcattttcatac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tttattctttataaaatctatgatatcatatgtaacattttgaaactttcattttcatac 223
Query: 659 ttaatacaccttgtgaatttct 680
|||||| |||||||||||||||
Sbjct: 222 ttaatataccttgtgaatttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_c07.g1 MSMg01no142_c07.g1 CHROMAT_FILE:
MSMg01no142_c07.g1 PHD_FILE: MSMg01no142_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:25 2005
(559 letters)
>mm_chr2_129139253_129140211
Length = 959
Score = 994 bits (514), Expect = 0.0
Identities = 541/550 (98%)
Strand = Plus / Plus
Query: 1 aggggtgtagaaatgagttcaaggcatacaggggctatgcatttatgtgaattcaagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggtgtagaaatgagttcaaggcatacaggggctatgcatttatgtgaattcaagact 260
Query: 61 atgttctttctggctgtgagcgtttacagagtttgacattcatgaggatgtagggatcct 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atgttctttctggctgtgagcgtttacagagtttgacattcatgaggacgtagggatcct 320
Query: 121 gaaattaactattcacttgtctacctcaagggagaggtgttcagaggcacaaacatgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaattaactattcacttgtctacctcaagggagaggtgttcagaggcacaaacatgaag 380
Query: 181 agacaagtgagctatctgtgtccattcatgccctacttagttttaattccatgacagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacaagtgagctatctgtgtccattcatgccctacttagttttaattccatgacagtta 440
Query: 241 ggcaggaggaaaggatgtccataacaccttattgtcttccaggttttacaatgttacctc 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ggcaggaggaaaggatgtccataacaccttattggcttccaggttttacaatgttacctc 500
Query: 301 aacttaatcctctcatcagaccagagaggtaggtcatcccatcacacattgcagaagagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttaatcctctcatcagaccagagaggtaggtcatcccatcacacattgcagaagagg 560
Query: 361 aagtagagttctagcaaaattaagtaaccagcccgaggttgcaaggttagcaggttgcgg 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 aagtagagttctagcaaaattaagtaaccagcctgaggttgcaaggttagcaggttgcgg 620
Query: 421 aaatggggttcagacttcagactatactcaaccacaaagctgtctctgtgtcttaatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatggggttcagacttcagactatactcaaccacaaagctgtctctgtgtcttaatgta 680
Query: 481 gcctgcctctctctctctctctctctctctctctcacacacacacacacacacacacaca 540
||||||||||||||||||||||||||||||||||| | | | | | ||||||||||||||
Sbjct: 681 gcctgcctctctctctctctctctctctctctctctctctctctctcacacacacacaca 740
Query: 541 cacacacaca 550
||||||||||
Sbjct: 741 cacacacaca 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
