BAC Information

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BAC

Clone NameMSMg01-143C04
Chromosome2 (Build37)
Map Location 85,606,765 - 85,607,215
singlet/doubletsinglet
Overlap genenone
Upstream geneSerping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012
Downstream geneOlfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143C04.T7 (MSMg01no143_c04.b1)MSMg01-143C04.TJ (MSMg01no143_c04.g1)
ACCAG347565AG347566
length795672
length of high quality
(start - end)
---451 (76 - 526)
definitionCHROMAT_FILE: MSMg01no143_c04.b1 PHD_FILE: MSMg01no143_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:36 2005CHROMAT_FILE: MSMg01no143_c04.g1 PHD_FILE: MSMg01no143_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCTCCCCCCCCCTCCCCCCTTTTTTTCTTTCCCCCCCCCCCTTTN
TCCCCTTTTCCCTTTTTCCCCCTTAATANATATCCCCAATTACTTTTTTA
TTCTTTTTTCTCCTCTCTCTTTCCTCCCTTTCTCCTCATTTTCTATTTTT
TTTTTTTTTTTTTATCTCCTTNCTTTTTTTTTATCCCCCCCCTTATTTCC
TTAATAAAATTTTTGNCCGGGCCCCCGGCCTTTAAATTACCGGAAACTTC
CAACTTATTCCTGGCTCCAAAAAAAGAAATCCCCGCCCCGNGNNAAATTT
TTCCCCAGGGGNATATTATTCCTCCCCTCTTCCAACCCCCCCAACCTTTT
TAAAAACTTGGCCATCCTAAAAAATTTAATAGGCAACTTTAATTCAATTT
CCCGCGGAAATCCTTTACCCCTTTGGTTAAAACCTTTCCCTAAAAGACCC
CAGGGGTCTCCCCCCTTAAAAAAAGAAAGGCTTTTTAAAATTTCCCTTCC
CAAGGTAAACCTTTTCCCATTTTCCCCTTTAAAAAATGTGTTAACCCAAA
TATTATTTTTTTAAACCCCTTTTATACTTTTTTTTCCCATCCCCTAGGCT
CTTCTTTTTTTCCCCTTTTGGGGTCTTAAAAGGTCTTTTTCCCCCCCTTT
TTTTTATTAAAACTCTTTTTTCCCCCTATTTGTGTAAAAACGCCTCCTTC
CCTCCCGCGGGGTATTTTTTTTCCCCTCCCCCCAAAAAATAGTTTGCTAC
ATAAACTCGTGGTTTTCCCCCCTCCCCCCACCCCTTTTATTTACA
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTCATGGTTTTGCAGCTCAGGGAAA
TTACAAGCAGGACAATTAATCAACAGTCTGTTGGTGATGTTGGTTTAATA
TTATTTAATGAGATAAAGAAAGATAGTCTATGGGGTATATTCTCATTGTA
TTCAATTGTAATCTCTACACATTCTGTATTGTTTTAGTGAATTCAAATAA
ATGCATATAATTATTTGCATATTTGAGCATATATTTGTGTGGGCATCTTC
ATTTATACATGGAGATATTTGAAAATTTATAAACTCATGTCCTTAGGAAT
ACCTACAACAGGAAATAGATAAGCAAATTCTTCCAAATCAATGGCCATTT
TTTTAATCTTGTTCTACGCCCCAAGAGATTTAGAAATGAGAGTGTTAACT
GCTAGGTGTTGTGTCACTCTGTTTTCTTGCTCATCCTCTCTTCCCCTCTC
TCCTTCTTCCTAGTTCCAGAAACATTATTGCCTTTTAATCAGAACAACTG
CATGGCTACAGTACTTATATATCTTACCCCAAACTTTATAATTTGAAAAA
TTTTTCTAGTTTTTTTTTCCATTATGAAAACATCCACCCACCCCTCTTAC
TCTTTCTGGAAATTTCAATCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_c04.g1 MSMg01no143_c04.g1 CHROMAT_FILE:
MSMg01no143_c04.g1 PHD_FILE: MSMg01no143_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:36 2005
         (451 letters)



>mm_chr2_85606565_85607415
          Length = 851

 Score =  841 bits (435), Expect = 0.0
 Identities = 447/451 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatggttttgcagctcagggaaattacaagcaggacaattaatcaacagtctgttggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ctcatggttttgcagctcagggaaattacaagcaggacaattaatcaacagtctgttggt 592

                                                                       
Query: 61  gatgttggtttaatattatttaatgagataaagaaagatagtctatggggtatattctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 591 gatgttggtttaatattatttaatgagataaagaaagatagtctatggggtatattccca 532

                                                                       
Query: 121 ttgtattcaattgtaatctctacacattctgtattgttttagtgaattcaaataaatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttgtattcaattgtaatctctacacattctgtattgttttagtgaattcaaataaatgca 472

                                                                       
Query: 181 tataattatttgcatatttgagcatatatttgtgtgggcatcttcatttatacatggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tataattatttgcatatttgagcatatatttgtgtgggcatcttcatttatacatggaga 412

                                                                       
Query: 241 tatttgaaaatttataaactcatgtccttaggaatacctacaacaggaaatagataagca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 411 tatttgaaaatttataaactcatgtccttaggaatacctacaacaggatatagataagca 352

                                                                       
Query: 301 aattcttccaaatcaatggccatttttttaatcttgttctacgccccaagagatttagaa 360
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 351 aattcttccaaatcaatggccatttttttaatcttgttctatgtcccaagagatttagaa 292

                                                                       
Query: 361 atgagagtgttaactgctaggtgttgtgtcactctgttttcttgctcatcctctcttccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atgagagtgttaactgctaggtgttgtgtcactctgttttcttgctcatcctctcttccc 232

                                          
Query: 421 ctctctccttcttcctagttccagaaacatt 451
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctctctccttcttcctagttccagaaacatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)