BAC Information

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BAC

Clone NameMSMg01-143K10
Chromosome2 (Build37)
Map Location 38,960,517 - 38,960,809
singlet/doubletsinglet
Overlap geneA930041I02Rik
Upstream geneDennd1a, LOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1
Downstream geneLOC100042584, Ppp6c, Vmn2r-ps2, Ppia-ps2_560.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143K10.T7 (MSMg01no143_k10.b1)MSMg01-143K10.TJ (MSMg01no143_k10.g1)
ACCAG347941AG347942
length685702
length of high quality
(start - end)
276 (43 - 318)293 (95 - 387)
definitionCHROMAT_FILE: MSMg01no143_k10.b1 PHD_FILE: MSMg01no143_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:16 2005CHROMAT_FILE: MSMg01no143_k10.g1 PHD_FILE: MSMg01no143_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATAGTCCCAAATACGCGGAATTC
ACTCTACATTCACGGCTAGCTAGCCTGGAATTTGCAGCTGTCCTCCTGCC
TCTGCCTGCCTGAGTTCTGGTATTATAGGCATGGGCCCCATATATGGGCC
ACCATACCAGGCTTACTTTTGTTTGTCTACTTTAATTGAGATAGGGGTTC
ATGCATGCCAGGCTTACCTCAAACTTCCTATGTAGCCCAAGATGACTTTG
AACTTTTCATCCTCCAGCCTTAGCTTAGGAAGTACTGGCAACACAGTTAC
GCCAGAACTCAGTGGTTTTGCTGGGGCTGAGATTTGAATCCAGGTCCTTC
TGTGTCTAAGTCATTCATATGAACCATCTATTCCTCAGTTCTCTAAAGGA
ACACTTTGTTAGCCCCCACCCCGGGGCCAGAATATTTCATACTGCAACCC
CTCTTCTTTCCCCCTGAGACAGGGCTTCTCTGCGTAGCCCGGGCTGCCCT
GGAACTCACTCTATTTACCAGACTGACCTCTAACTCTGAAATCCACCTAC
CTCTTGTCTCCCAAGTACAGGCATAGAAAAAACTATCCCCTTGCTCATCC
ACCCATATTCTTATCTATATATGTATCCGACCCCTTTACCTATTTGTATA
TAAGTGCATTTCCCGTAAGCAAGCTGTTAATGTTG
CATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGTGTTGAAATGTTAAATGTCTTCAG
AAATACCTGGATTGATGACTTGTTTTATACATTTTTAAATTTTTTTCCTG
TGAAATTTTTATGTGAGGAAAATGTGAGTTTTGCTGATCTGCTAAGAGAG
ATACTAAATGGAATTCTGGTAGCTCAGTGGGAGAGCACTTGCCTAGCATG
CATGAGGCCTGTGGGCCTGATTCCTAGCAATTTATGTTTGAATGAGGTAC
ATTTTCATTTTGATTTTTGAGACTAGGTCTCTCTATGTAGCCTAGCCATC
CTGGAACTCTCTTTGTAGACCAGGCTGACCTCACACTCGAAGAGAGTCAC
CTGCCTCTGCCTCTTTTCCCCCCCCCATGTTCCTGTCTAAGGCACAGCTG
GGAAACTCCCGGCATTCTTTTTTCTGAACAATTCCCCCAACTAGTTTATT
TCATATACCTCTTCTTTATTCTGTAATCACCCGTTTCTTATTCCCCCTAC
ATCTTTTATTTTCTTCTCCCCCTTATTACGCCTCCCTCCATTACTGCCCA
TCTGCCCAAATTCTACGTACTTTCACAATGTACCATTCCTCATCTTGACT
ACTCTTACCCGAGCTGTTCTCATTGAATTTCTCTCAACTATGTTTTTTCC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_k10.g1 MSMg01no143_k10.g1 CHROMAT_FILE:
MSMg01no143_k10.g1 PHD_FILE: MSMg01no143_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:16 2005
         (293 letters)



>mm_chr2_38960486_38961178
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagaaatacctggattgatgacttgttttatacatttttaaatttttttcctgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttcagaaatacctggattgatgacttgttttatacatttttaaatttttttcctgtgaa 265

                                                                       
Query: 61  atttttatgtgaggaaaatgtgagttttgctgatctgctaagagagatactaaatggaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttttatgtgaggaaaatgtgagttttgctgatctgctaagagagatactaaatggaat 205

                                                                       
Query: 121 tctggtagctcagtgggagagcacttgcctagcatgcatgaggcctgtgggcctgattcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 tctggtagctcagtgggagagcacttgcctagcatgcatgaggcctgtggacctgattcc 145

                                                                       
Query: 181 tagcaatttatgtttgaatgaggtacattttcattttgatttttgagactaggtctctct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 144 tagcaatttatgtttgaatgaggtacattttcattttgatttttgagactagctctctct 85

                                                                
Query: 241 atgtagcctagccatcctggaactctctttgtagaccaggctgacctcacact 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  atgtagcctagccatcctggaactctctttgtagaccaggctgacctcacact 32


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)