Query= MSMg01no144_h21.b1 MSMg01no144_h21.b1 CHROMAT_FILE:
MSMg01no144_h21.b1 PHD_FILE: MSMg01no144_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:20 2005
(324 letters)
>mm_chr2_132334762_132335485
Length = 724
Score = 480 bits (248), Expect = e-140
Identities = 300/326 (92%), Gaps = 16/326 (4%)
Strand = Plus / Minus
Query: 3 gaggaagcaggaagcgaagttcaagtttcctattagctcacccttgaacactaaacagca 62
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gaggaagcaggaagtgaaatttaagtttcctattagctcacccttgaacactaaacagca 358
Query: 63 gcgagcgggcaaacgcaagcagtctgagatgtttgatttgaggtgaccaagacttttaga 122
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gcgagcgggcaaacgaaagcagtctgagatgtttgatttgaggtgaccaagacttttaga 298
Query: 123 ctcagttgatagagtctatggtgaggaaaatggattcccaagatgctgtctaccttgttc 182
||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 297 atcaattgatagagtctatggtgagggaaatggattcccaagacgctgtctaccttgttc 238
Query: 183 cccttcaacattcagtcactcaagagaagacat-----------tagttgtatgaaatca 231
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 237 cccttcaacattcagtcactcaagagaagacattaaaagggtgatagttgtatgaaatca 178
Query: 232 gccagacatgggcaggtactgctttgatgtcacaactgtatcacaggctttaggaatt-- 289
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 177 gccagacatgggcaggtactgctttgatgtcacaattgcatcacaggctttaggaattgg 118
Query: 290 -gtttttttggtttttttgttgttgt 314
|||||||| |||||||||||||||
Sbjct: 117 ggttttttt--tttttttgttgttgt 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space: 225225
Effective search space used: 225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_h21.g1 MSMg01no144_h21.g1 CHROMAT_FILE:
MSMg01no144_h21.g1 PHD_FILE: MSMg01no144_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:20 2005
(631 letters)
>mm_chr2_132197627_132198658
Length = 1032
Score = 1183 bits (612), Expect = 0.0
Identities = 627/632 (99%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 1 agtcctggggtccaccagtgctttgttgggaagactgtctaa-accacagggatgctgag 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agtcctggggtccaccagtgctttgttgggaagactgtctaagaccacagggatgctgag 260
Query: 60 ggtatgggcattgactgtatcttcttgattgcactctgtgacagggagacctttatgcct 119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtatgggcattgactctatcttcttgattgcactctgtgacagggagacctttatgcct 320
Query: 120 cactatagatacgctacttcaaagatgagtttagtggtctccgattcaaagaagagggat 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cactatagatacgctacttcaaagatgagtttagtggtctctgattcaaagaagagggat 380
Query: 180 gaaaagtgtggagctgtttctccattccaaactccctctaatgagcttttcacgacctca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaagtgtggagctgtttctccattccaaactccctctaatgagcttttcacgacctca 440
Query: 240 ttcttcacaaaggaagaggtgaaaatcacatccacaccatgacttcgccgggctgatgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcttcacaaaggaagaggtgaaaatcacatccacaccatgacttcgccgggctgatgtt 500
Query: 300 cctaatgatccgttttcattatttccatttcattacagtggagacacacacatatgagtc 359
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 cctaatgatccgttttcattatttccatttcattacagtggagacacacagagatgagtc 560
Query: 360 ctggggttaggacttttacccggatctttggatctcaagtagagttccttttgtaagtcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggggttaggacttttacccggatctttggatctcaagtagagttccttttgtaagtcg 620
Query: 420 gagtatgttctagaaaattgtccaaatcatagcaaatggacagattatactcattgccac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtatgttctagaaaattgtccaaatcatagcaaatggacagattatactcattgccac 680
Query: 480 tggaaacctcggctctttctgtgtcctcttcctccaagaccccagagccctgaaatgctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggaaacctcggctctttctgtgtcctcttcctccaagaccccagagccctgaaatgctt 740
Query: 540 ggcattaaagttatccagaactggatacatttcttgtgtcaggagcctcccatctttgcc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcattaaagttatccagaactggatacatttcttgtgtcaggagcctcccatctttgcc 800
Query: 600 ctatgggcttgatgagatttgatacatctgtg 631
||||||||||||||||||||||||||||||||
Sbjct: 801 ctatgggcttgatgagatttgatacatctgtg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1032
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1022
Effective search space: 634662
Effective search space used: 634662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
