BAC Information

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BAC

Clone NameMSMg01-144K11
Chromosome2 (Build37)
Map Location 91,595,983 - 91,596,422
singlet/doubletsinglet
Overlap geneD030051N19Rik
Upstream geneFnbp4, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik
Downstream geneChrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144K11.T7 (MSMg01no144_k11.b1)MSMg01-144K11.TJ (MSMg01no144_k11.g1)
ACCAG348666AG348667
length812733
length of high quality
(start - end)
78 (41 - 118)440 (75 - 514)
definitionCHROMAT_FILE: MSMg01no144_k11.b1 PHD_FILE: MSMg01no144_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:32 2005CHROMAT_FILE: MSMg01no144_k11.g1 PHD_FILE: MSMg01no144_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTXXXXXXXXXXXXXXXXXXXXXXCTATTTTCTAAGGATCCGCGGAAT
TCCAGGACTTTCGAGCACTAATACCTGTGCTCTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGAGAGACCGAGAGAGAGAGAGAGTGATACTGCTCCCCCC
TCCTTCTCCCCTTTCTCCCCTCCTCCCCCCCCTCTCCTCCCCTCCCTCCC
TCTCCTTCTTTTCCTTTTTTCCCCCTTTCCCCCTTCTTTCTTTTTTCCTC
CCCTTCTTTTCCCTCCCTCCTCCTTTTCTCCCTTTCCCTTTTTTCTTTCT
CCCCTCCTTTTCCCCCCCTTCCTTTTTTTTTTCCTCTTTTTCCTCTTTTC
TCTCCCCCTTTTCCCCTTCTTTCTCCCCCCCCCTTCTCTCCCCCTTTTTT
TTTCTTCTCCCCTTTCCTTTTCTCTCCCCCCCTCTTTTTCTCCCTTCTTT
CTTCTTCCCCTTCCTCTCCTTCCTTTCTCTTCTCTTTTCTCTTCCTCCTC
TTTTTTTCCCCCCTCTCCTCTCCTTTCCCTTCCCTCCTTCCTTCCTCTTT
CCCTTTTCCCCCCTCTCCCTTCTTTCTTTTTCTCTTCCTTCCCTCTCTTC
CCCCTTTTTCCTCCTTTCTTCCTCCTTCCCTCCCTTCTTCCTCCCCCTCC
CCCTTTTCCTCCTCCCCCCTCTCCCCCCTTTCCTCTCCCTCCTTTTTTCT
CTTTTTTCCTCCCCCCTTTCCCCTCCTCCTTTTTTCTTTCCTTTTCTTCC
TTTTCCCGCTCCCCTCTCTTCTTCCCTTCTCCCTTTGTTTTCCCCTTTTC
CCCCTCCCCTCT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGAACCTAATTGCTAGACCATATGG
GACACATTTCATTAATAGGAGAGGCCAATTGTAAATATCCACAGCTTTCA
AGAGAGAAATAGAGAAGAAGAAAGTCATTTTTTTGAGTTAGGGTCCAGGA
AAGATGGGCAGTAGAGGTCTTTAAGAAGCTGTAATGGGGGAAAGGCCTTT
AGAGAAAGGTTGGGCAAGCCTGCTAACAATGTTGTCTGCAATCGTGCATT
TATGTACACACACCCCATACACAAACAACCATAAAAAACTTTTAAAAATT
AGAACTCAGAAGCCTGTTTTGTTTTGGATTTTTTGAAATAGGGCCTCACT
CTTGTAGGTCTGATTGCCCCGAAACTTACAGAGATCTACCTACCTCTGCC
CCTCAAATGCTGAATAAAAGGCATATGCCACTACATCTTGCTGTTGTGGG
ATATTTTGTTTGTTTTGTTCTGAAGCAGAGTCTCATTTTATATTCCACGC
TGTTCTGTAACTCGCTGTTTATGCCTAGTCCCTCTACCGTTAATTTGCTT
TACAGGGCCTTGCGATCCTATAATATTTTGTCAAACTTGTCCTTAATGTG
TGCTCTGACCTTTACATATCTATTTCCGCGCACTGACTTTTTATTGGCAT
CTCTTCCCCCTCGGTTGTTTCCTCCCCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_k11.g1 MSMg01no144_k11.g1 CHROMAT_FILE:
MSMg01no144_k11.g1 PHD_FILE: MSMg01no144_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:32 2005
         (440 letters)



>mm_chr2_91595783_91596622
          Length = 840

 Score =  828 bits (428), Expect = 0.0
 Identities = 437/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaacctaattgctagaccatatgggacacatttcattaataggagaggccaattgtaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aggaacctaattgctagaccatatgggacacatttcattaataggagaggccaattttaa 260

                                                                       
Query: 61  atatccacagctttcaagagagaaatagagaagaagaaagtcatttttttgagttagggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatccacagctttcaagagagaaatagagaagaagaaagtcatttttttgagttagggt 320

                                                                       
Query: 121 ccaggaaagatgggcagtagaggtctttaagaagctgtaatgggggaaaggcctttagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggaaagatgggcagtagaggtctttaagaagctgtaatgggggaaaggcctttagag 380

                                                                       
Query: 181 aaaggttgggcaagcctgctaacaatgttgtctgcaatcgtgcatttatgtacacacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaggttgggcaagcctgctaacaatgttgtctgcaatcgtgcatttatgtacacacacc 440

                                                                       
Query: 241 ccatacacaaacaaccataaaaaacttttaaaaattagaactcagaagcctgttttgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatacacaaacaaccataaaaaacttttaaaaattagaactcagaagcctgttttgttt 500

                                                                       
Query: 301 tggattttttgaaatagggcctcactcttgtaggtctgattgccccgaaacttacagaga 360
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 501 tggattttttgaaatagggcctcactcttgtaggtctgattgtcctgaaacttacagaga 560

                                                                       
Query: 361 tctacctacctctgcccctcaaatgctgaataaaaggcatatgccactacatcttgctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctacctacctctgcccctcaaatgctgaataaaaggcatatgccactacatcttgctgt 620

                               
Query: 421 tgtgggatattttgtttgtt 440
           ||||||||||||||||||||
Sbjct: 621 tgtgggatattttgtttgtt 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)