BAC Information

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BAC

Clone NameMSMg01-144O01
Chromosome2 (Build37)
Map Location 30,774,730 - 30,775,072
singlet/doubletsinglet
Overlap genenone
Upstream geneOdf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l, Cstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges
Downstream genePpia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1, Fubp3, LOC100041465, Prdm12, Exosc2, Abl1, BC094274, Fibcd1, Lamc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144O01.T7 (MSMg01no144_o01.b1)MSMg01-144O01.TJ (MSMg01no144_o01.g1)
ACCAG348826AG348827
length763735
length of high quality
(start - end)
346 (68 - 413)314 (76 - 389)
definitionCHROMAT_FILE: MSMg01no144_o01.b1 PHD_FILE: MSMg01no144_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:49 2005CHROMAT_FILE: MSMg01no144_o01.g1 PHD_FILE: MSMg01no144_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAGAATCCGCGG
AATTCCAGGCCATTCCCCAATGATCTAAAACAGCCAGGATATATATAGTT
AGACCTGCCTCAAAAAAAAAAAAAAATCAAAAATAAATAAATAATACAAA
CAGGGTTTTACTATGTAGCCCTGTGTGGCTTAAAACTTACTCTGTAGACC
AGGTTGTCCTTGAACTCACATAAATCCACCCACCTTCGCCTCCAGAGCTG
GACTACCGACCTTTATCACATAAAGGTTGACATAACTTTGTCTGCTTTTT
ATTTGAGCCGGGGCTTCAAGTATCTTAAGGTGTCCTTGGCTCTTTGTGTG
GCAAAGGATAAACTACTGATGCCCCTGGCTCTGTCTCAAGTGCTGAGATT
ATAGCTATGTGCCACCACCCCCGGCTTTACTGTCTCTGCCTTGCAACACA
CCTTCGTACACATACATTCTCATTCCTCCTTTTATTTCCCCCTTTCTCTT
ATATACTTCCTCTCCCACATTTGCGCGTTCCAGAGTCACAGGTTTTTATA
TCTCTTCTTGCATCCCGTCCCATTTACTGCATCTACCTCCCAACCCCCTT
TATCATCCTCTAACCCGTTGACATAACGAACCCTTGCCCCTTTTCCAGTC
TTGCTTTCCCGCTTGTCACAAAGGCAATCGCGTCTCGATTTTGCTCTGTT
TCCTCCCCGTTTCCTCCCCCGTGCCCTCCGTGTTGCGATTTTTCCCTCCT
TTTAAACAACTAT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCAGTCTCAAAAAATAAGTTGGGG
GCTAAGAAGATGGCTTGGAGGGTAAAGTGCTTGGGGACAAGCATAAGTCT
CTGAACCTGGGTCTCAGAACCCGTATAAGAACCGGCACAGCCGTACATGC
GCCTGGAATCCCAGCACAAGCTTTCTGTTAGCCAACCTTAATCCGTTATG
CAGAGGTGATTGACAAGAGAGACCACACCCTAAGCAAGATGGAAGGCGAT
GAAACCCGAGGTTTCCCTCTGATTTCCACACACCCTGTGGCATGTGAGGG
CCTGCACTCATACACACAAACACTATGTTCCCTTCCACTATGTATCACGT
TTAAAGCAGTCTAGGACCCATGAGTTTCTGTTCCAAAATATTCAACATAC
TTGACCGCATAGCTAATGGTAGGGTAGTCAGCTAGAGGGAGAGACCTTTG
GGGAATGTTCTAGAAGGGGCAGCCTTACCTTGTATCCCATTAATCTGACC
CTTATTTGTATTGCCTAGTCTTAGGTGCGTCCCTGCCCCCAGACATTCAG
TTTCAAGTTTCCATTGCCTAAGGTAGCGTTCCCCCTCCTTGCGACTTGTT
TTTTTGAAGCTATATGCAGGCTGTATCAGGCGTTAACGTTCAATGGTTGG
TTCTGGTCCCCATCCCTTATTTATTTCCCACGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_o01.b1 MSMg01no144_o01.b1 CHROMAT_FILE:
MSMg01no144_o01.b1 PHD_FILE: MSMg01no144_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:49 2005
         (346 letters)



>mm_chr2_30774328_30775072
          Length = 745

 Score =  596 bits (308), Expect = e-175
 Identities = 333/344 (96%), Gaps = 6/344 (1%)
 Strand = Plus / Minus

                                                                       
Query: 8   ctaaaacagccaggatatatatagttagacctgcctc-----aaaaaaaaaaaaaaatca 62
           |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||
Sbjct: 745 ctaaaacagccaggatatatatagttagacctgcctcaaaaaaaaaaaaaaaaaaaatca 686

                                                                       
Query: 63  aaaataaataaataatacaaacagggttttactatgtagccctgtgtggcttaaaactta 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaataaataaataatacaaacagggttttactatgtagccctgtgtggcttaaaactta 626

                                                                       
Query: 123 ctctgtagaccaggttgtccttgaactcacataaatccacccaccttcgcctccagagct 182
           ||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||
Sbjct: 625 ctctgtagaccaggttgtccttgaactcacagaaatccacccaccttcatctctagagct 566

                                                                       
Query: 183 ggactaccgacctttatcacataaaggttgacataactttgtctgctttttatttgagcc 242
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 565 ggactaccgacctttatcacataaaggttgacataac-ttgtctgctttttatttgagcc 507

                                                                       
Query: 243 ggggcttcaagtatcttaaggtgtccttggctctttgtgtggcaaaggataaactactga 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggggcttcaagtagcttaaggtgtccttggctctttgtgtggcaaaggataaactactga 447

                                                       
Query: 303 tgcccctggctctgtctcaagtgctgagattatagctatgtgcc 346
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgcccctggctctgtctcaagtgctgagattatagctatgtgcc 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)