BAC Information

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BAC

Clone NameMSMg01-145C23
Chromosome2 (Build37)
Map Location 119,988,791 - 119,989,172
singlet/doubletsinglet
Overlap genenone
Upstream geneGchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4
Downstream genePla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145C23.T7 (MSMg01no145_c23.b1)MSMg01-145C23.TJ (MSMg01no145_c23.g1)
ACCAG349052AG349053
length708707
length of high quality
(start - end)
382 (327 - 708)630 (75 - 704)
definitionCHROMAT_FILE: MSMg01no145_c23.b1 PHD_FILE: MSMg01no145_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:12 2005CHROMAT_FILE: MSMg01no145_c23.g1 PHD_FILE: MSMg01no145_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAACGCGGCGGAA
TTCTTTGTTTCTTCCGATCAGGGGCTCTTTCAGCTTTATCTGCCGTCCTC
AGGATTACCCTTCTGCCACCATCACTACCTGAGCTCCACCCAGGCTGCCT
CTATTCTAGGCAGTAAGGAAGATAAAGGGGCCTTGGGACTTTTGGTTTAT
GAAGTTACAAAAATCAGGTCTAGACTGACTTCATATAAACTTCTTTTCTT
TGAAAGAGAACTAAACTTTTATCTAAAGAGCAAGAATTACTAGGTATTCC
AACTGTTCTAGTTTTCCAGATTTTTTCTAACTTTGTAATCTTATAGCCTA
GCCTAGAATTTACAATGTAGCCCAGGTTGCCCGTAGGCCCATAGCAGTTC
TTCTGCCTCCGGCTCCCAAGTACAGTGATTATGGGCATGTGTCACCACAC
CCAGCCTTTCCCAGCTATCTATGTCTCTGAGAATAAGGCCGTGAATTAAC
CACCGTGTGATTAGTGTCAGAGTCTGTTGGATCAAGGATCAGGCAGATCA
AGAAGAGCTCTCTCCACTCAATGTGTGAGATCTCGGCACAAACAACTTGT
ATAGTTTTGGAGAACACAATGGCTGTGTCTAAAAAGAAGGCAGAAGAACA
CACTTCAAGATGGCTCCTTGGGCCAGTGAGATGGTTCGGTGGGTAAAGCA
CTTGTCAC
CGATGAAGTGGGAGGCCTGGCGGCGCCTGGCTTTCAAACGGGGTGACCTA
TAGAAGGATTTGCGAAATACCAGGAACCCTAGCTCAACAAAATAAAACAA
AACAAAATCTTGATCTTCCCACGGTCTTACCCAGGCCCCCACAGCTGCTT
TGAGTCCATGAGCTCCGTGGGCCTGGCATGTCCAGAAGACATCGTTTTGC
TCTGGTCCTCCCAAGTTTTTGGCTCTTAAAATCTTTGCACCCCCTCTGCT
TGATGGCCCCTGGGCCTTAGCAAGTGTGTGTGATGTTAAAGGTCTCATCT
GTAGCTGAGAGTCCCACGGATGTTTAGCTGTACTCTGACTGGTTGTGGTT
CCCCTTTTCTCTCCTTCTTTTTCTTTTCTCTTATTTACTTTTGAGACAGA
GTCTTTCTGTGTAGCGCTGGCTGTCCTGGAAATCTCTATGTAGAACAGGT
TGTCCTCAAACTCCAGAGATTCACCTGCTCCTGCCTCCTAAGTGCTGGGA
TCAAATTCATGCACAACAATGCCTGGATAGTTTTGAGTTAATCAACCATC
CATTGTACAAAGAAATGTCCCTTAAGAGGTCTAAGGGCTACTCTAATCTA
TGGGTAGGGACATATGATTTTAGAAGGGCCCTTCAGTACTCTGTTTATCT
GACAGTATAGTAGTAGTTGGTTCACCATCATGTTATGTGGGTGATGTAGT
CTAGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_c23.b1 MSMg01no145_c23.b1 CHROMAT_FILE:
MSMg01no145_c23.b1 PHD_FILE: MSMg01no145_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:12 2005
         (382 letters)



>mm_chr2_119988462_119989243
          Length = 782

 Score =  739 bits (382), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaactttgtaatcttatagcctagcctagaatttacaatgtagcccaggttgcccgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctaactttgtaatcttatagcctagcctagaatttacaatgtagcccaggttgcccgtag 652

                                                                       
Query: 61  gcccatagcagttcttctgcctccggctcccaagtacagtgattatgggcatgtgtcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gcccatagcagttcttctgcctccggctcccaagtacagtgattatgggcatgtgtcacc 592

                                                                       
Query: 121 acacccagcctttcccagctatctatgtctctgagaataaggccgtgaattaaccaccgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 acacccagcctttcccagctatctatgtctctgagaataaggccgtgaattaaccaccgt 532

                                                                       
Query: 181 gtgattagtgtcagagtctgttggatcaaggatcaggcagatcaagaagagctctctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gtgattagtgtcagagtctgttggatcaaggatcaggcagatcaagaagagctctctcca 472

                                                                       
Query: 241 ctcaatgtgtgagatctcggcacaaacaacttgtatagttttggagaacacaatggctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ctcaatgtgtgagatctcggcacaaacaacttgtatagttttggagaacacaatggctgt 412

                                                                       
Query: 301 gtctaaaaagaaggcagaagaacacacttcaagatggctccttgggccagtgagatggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtctaaaaagaaggcagaagaacacacttcaagatggctccttgggccagtgagatggtt 352

                                 
Query: 361 cggtgggtaaagcacttgtcac 382
           ||||||||||||||||||||||
Sbjct: 351 cggtgggtaaagcacttgtcac 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)