BAC Information

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BAC

Clone NameMSMg01-145G16
Chromosome2 (Build37)
Map Location 172,970,784 - 172,971,193
singlet/doubletsinglet
Overlap genenone
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800
Downstream genePck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145G16.T7 (MSMg01no145_g16.b1)MSMg01-145G16.TJ (MSMg01no145_g16.g1)
ACCAG349227AG349228
length703706
length of high quality
(start - end)
454 (43 - 496)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no145_g16.b1 PHD_FILE: MSMg01no145_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:29 2005CHROMAT_FILE: MSMg01no145_g16.g1 PHD_FILE: MSMg01no145_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATTTCGAGAAGAGCGCGGAATT
CCAGACCCATGCAATGAGTACTCTCAAAACCCCTGCTTTGTGTGATTCTG
TTAGTGTTGAGGAGTAAAGCCCAGGCTTCCTAAATACCAGAGACACACAG
GACAGCTGACCCATACCTCCAGTTCTCGATGACTTCTTCTTTTAGACACA
GGACTGTTCTACAGCCCGGCTGGTCTGGAACCCACAATCCTGCCTCAGGC
TCCTGAGTGTAGAAGTGACAGGGGTGTGCGCCACAGCTGCCCTTGTTAAT
TTACCCATGGTTTCTTCATCTTGGTGGATGGCAGAGTAGATGGCAGCACC
TTGGCGTGTGAGATGGTGATGTTTGGAAGCTCAGCATCACATGGTACCCC
AGCCCATGAACAACCCGCCCCTCCAAAGCTCAATGTCACCTCTGTATGGT
TCTGACAGCTAATATGGCCACTTGGGCTCAGATGACAACTTTCAGGACAA
GTGGTCAGACACAGGGTTTCATTTTGAGGTCACCACACGTCTTGTCTTAA
AGCCCTTGATCCTGTCCTTTCCACAATTAGATAAAGCAGTGAAGATGAAG
CCTGTCCAGTCTGCAGGGAGCAGGACCCCACGGTCTGATCAGTCTCCCCT
AGATCCTTATCTCTCAGAAGCCTGTCCGTGCCCCGTTCGGCTTAACATAA
CCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTATGTAGACCAGGCTGACCTCATCCT
CAGATCTACCTGCCTTTGCCCAAGTGTTCTGATTATACTATGCTGGGCAG
AACGGCTTTTTTTCTTCTCCCTGAGACAGGGTTTCTCTGTATAGCCCTGG
CTCTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC
TGCCTGCCTCTGAGAACGGCTCCTTTTATTAGGCCTTCTGATTGTGGAAT
ACTTAAATCTCTTCTAAATATTTTGGCTGGCTTATCACCACAGTGCTAGT
TTTTACTGTGCACTTTGCACCCAAGAAGGGCCAGTCCTTAATGGTTTCCA
CTTTGTGTTTTCCACCCCCCATGAGTCTGTTTGGATCAACCTCTGGATTT
GGGACTGGTGGGACCAGCATGTTTGGGAGCACTCCCACTGATAACCACAA
TCTAATGAAGGTATCACCTGTACCCCCTCAGGTTTTGTATAGAGCCAGGG
AGCCTCATCTTTGCGTGAAGAGTGTCGCGTTGGGGGTCTCTCTCACAAGA
TGAACCTGAAGAACCCCCGGCACTCACAGTTCGTCCTCATCAGAGCTGGT
GTCCTGCCCTCTCTGTTCCCCATTCCAACTGCCCTGTTCCCTGTGAGATT
CTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_g16.b1 MSMg01no145_g16.b1 CHROMAT_FILE:
MSMg01no145_g16.b1 PHD_FILE: MSMg01no145_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:29 2005
         (454 letters)



>mm_chr2_172970342_172971195
          Length = 854

 Score =  754 bits (390), Expect = 0.0
 Identities = 405/410 (98%)
 Strand = Plus / Minus

                                                                       
Query: 45  tttgtgtgattctgttagtgttgaggagtaaagcccaggcttcctaaataccagagacac 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tttgtgtgattctgttagtgttgaggagtaaagcccaggcttcctaaataccagagacac 793

                                                                       
Query: 105 acaggacagctgacccatacctccagttctcgatgacttcttcttttagacacaggactg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 acaggacagctgacccatacctccagttctcgatgacttcttcttttagacacaggactg 733

                                                                       
Query: 165 ttctacagcccggctggtctggaacccacaatcctgcctcaggctcctgagtgtagaagt 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ttctacagcccggctggtctggaacccacaatcctgcctcaggctcctgagtgtagaagt 673

                                                                       
Query: 225 gacaggggtgtgcgccacagctgcccttgttaatttacccatggtttcttcatcttggtg 284
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||
Sbjct: 672 gacaggggtgtgcgccacagctgcccttgttaatttccccatggtttcttcatcagggtg 613

                                                                       
Query: 285 gatggcagagtagatggcagcaccttggcgtgtgagatggtgatgtttggaagctcagca 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gatggcagagtagatggcagcaccttggcgtgtgagatggtgatgtttggaagctcagca 553

                                                                       
Query: 345 tcacatggtaccccagcccatgaacaacccgcccctccaaagctcaatgtcacctctgta 404
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 552 tcacatggtaccccagcccatgaacaacctggccctccaaagctcaatgtcacctctgta 493

                                                             
Query: 405 tggttctgacagctaatatggccacttgggctcagatgacaactttcagg 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tggttctgacagctaatatggccacttgggctcagatgacaactttcagg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)