Query= MSMg01no145_h08.b1 MSMg01no145_h08.b1 CHROMAT_FILE:
MSMg01no145_h08.b1 PHD_FILE: MSMg01no145_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:33 2005
(561 letters)
>mm_chr2_116869822_116870783
Length = 962
Score = 1033 bits (534), Expect = 0.0
Identities = 552/558 (98%), Gaps = 1/558 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcaatcatggctctactctccgatgcctctaggctgcatcaagttgacagtta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaatcaaggctctactctccgatgcctctaggctgcatcaagttgacagtta 264
Query: 65 aggctaaccaggacaggaatgtcatgatgaaagccatgtgttcattaggtaaattgctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggctaaccaggacaggaatgtcatgatgaaagccatgtgttcattaggtaaattgctta 324
Query: 125 gaaataactttagtgtaatgggacagactcaagtacttcccctggcttcctatgacttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaataactttagtgtaatgggacagactcaagtacttcccctggcttcctatgacttat 384
Query: 185 taccagttctccattgactctgttacagagcgcatgtacacttctatgacataaagggtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccagttctccattgactctgttacagagcgcatgtacacttctatgacataaagggtg 444
Query: 245 atttgtacattttttttt-taaaaagaataaatccctcacaggagaaaaaaaataaaaac 303
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttgtacatttttttttaaaaaaagaataaatccctcacaggagaaaaaaaataaaaac 504
Query: 304 agacgaccatagtgttatgtcaggaatgtttgaaatcaagatcacaagttcaggaagctg 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agacgaccacagtgttatgtcaggaatgtttgaaatcaagatcacaagttcaggaagctg 564
Query: 364 aaattttaactgcgaaacactcttgggagacagaggagacaagtcctgtaggatctgaag 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaattttaactgtgaaacactcttgggagacagaggagacaagtcctgtaggatctgaag 624
Query: 424 catacattcatcattccatgatccattttctctcaccaatgctctgtctttggtcttcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catacattcatcattccatgatccattttctctcaccaatgctctgtctttggtcttcca 684
Query: 484 ggtgatagaacaaaccatcgcctcatgcaggctccgctagaagcattttcaggtagaggt 543
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggcgatagaacaaaccatcgcctcatgcaggctccgctagaagcattttcaggtagaggt 744
Query: 544 gaggcagctcccatccct 561
||||||||||||||||||
Sbjct: 745 gaggcagctcccatccct 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_h08.g1 MSMg01no145_h08.g1 CHROMAT_FILE:
MSMg01no145_h08.g1 PHD_FILE: MSMg01no145_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:33 2005
(493 letters)
>mm_chr2_116929598_116930491
Length = 894
Score = 855 bits (442), Expect = 0.0
Identities = 481/494 (97%), Gaps = 1/494 (0%)
Strand = Plus / Minus
Query: 1 tttggagag-attttgtgaatgatattatttggatgtctctgtataaagccatggattaa 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tttggagagtattttgtgaatgatattatttggatgtctctgtataaagccatggattaa 635
Query: 60 aatgaaacagagcagatgttaagataacaatagcaaaaggaagaagttttcttctattga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aatgaaacagagcagatgttaagataacaatagcaaaaggaagaagttttcttctattga 575
Query: 120 aactgtgagaggaataattattaccctcaaattagactagactgtctcttgccgtaacaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aactgtgagaggaataattattaccctcaaattagactagactgtctcttgccgtaacaa 515
Query: 180 aacttattttacagatttgaatatacgtcttaacgtacctattagtgatagcctagaata 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 514 aacttattttacagatttgaatatatgtcttaacgtacctattagtgatagcctagaata 455
Query: 240 ttcatatagggaattttaaagaagtaattagtgactgaaatttatgcactatttaaattt 299
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct: 454 ttcatatagggaattttaaagaagtatttagtgactgaaatttatgtactatttaaaatt 395
Query: 300 ttgtttggtcctaaatgcaaaaggtcatgaaaccccataaatatacccagcgaatgtgaa 359
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 394 ttgtttggtcctacatgcaaaaggtcatgaaaccccataaatatatttagcgaatgtgaa 335
Query: 360 aactaagaactcaggtgaagggtttgcccaagatttcgtaaatgagtcaaaagcacagtt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aactaagaactcaggtgaagggtttgcccaagatttcgtaaatgagtcaaaagcacagtc 275
Query: 420 gggcttggataagtgctctctgactgtagccaaatctaacattattaacacagtatgatt 479
||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct: 274 gggcttggataagtgctctttgactctagccaaatctaacattattaatacagtatgatt 215
Query: 480 ttgcctaccccaag 493
||||||||||||||
Sbjct: 214 ttgcctaccccaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
