Query= MSMg01no145_l03.b1 MSMg01no145_l03.b1 CHROMAT_FILE:
MSMg01no145_l03.b1 PHD_FILE: MSMg01no145_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:51 2005
(493 letters)
>mm_chr2_124637540_124638426
Length = 887
Score = 849 bits (439), Expect = 0.0
Identities = 475/491 (96%), Gaps = 8/491 (1%)
Strand = Plus / Minus
Query: 4 gaattcttagttttccccgg-atatatacacatgcacacatgcacacaaacgtagtctta 62
|||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcttagctttcctcggcatatatacacatgcacacatgcacacaaacgtagtctta 628
Query: 63 gttttctctgctggctcccacacatggtggtgtgtgtccttcagctcattgctttccttg 122
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 627 gttttctctgctggctcccacacatgatggtgtgtgtccttcagctcattgctttccttg 568
Query: 123 tggactcatctcctggccactcatcctttcccctatggcttgggctgtgagactgagctg 182
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tggactcgtctcctggccactcatcctttcccctatggcttgggctgtgagactgagctg 508
Query: 183 gtctgaattagcctctgtggagtataaagggacacccccccacacacacacacacccagc 242
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 507 gtctgaattagcctctgtggagtataaagggacaccccc-------cacacacacccagc 455
Query: 243 ccaaatcatgaagctttcgtagagtgggcagtacctgaagtgggacagtgctcactgaga 302
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 454 ccaaatcatgaagctttcgtagagtgggcagtacctgaagcgggacagtgctcactgaga 395
Query: 303 ctcccagatgtcttcaggtaaaaaatgagctgcagcttcttctgactaaaaccaggcaga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctcccagatgtcttcaggtaaaaaatgagctgcagcttcttctgactaaaaccaggcaga 335
Query: 363 tcctcaggatctcactgacttccagtccacatgcatgagcctgctctccagtttgttttc 422
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 334 tcctcaggatctcactgacttccagtccacatgcatgaccctgctcgccagtttgttttc 275
Query: 423 ccgcgtgaagaattatattgtcactcaaatcgcaagtggaaacagataacttctatagta 482
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 274 ccgcgtgaagaattatattgtcactcaaatcgcaagtggaaacagataacttctatagca 215
Query: 483 tgctgctgacc 493
|||||||||||
Sbjct: 214 tgctgctgacc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 887
Length adjustment: 10
Effective length of query: 483
Effective length of database: 877
Effective search space: 423591
Effective search space used: 423591
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_l03.g1 MSMg01no145_l03.g1 CHROMAT_FILE:
MSMg01no145_l03.g1 PHD_FILE: MSMg01no145_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:52 2005
(482 letters)
>mm_chr2_124478265_124479146
Length = 882
Score = 888 bits (459), Expect = 0.0
Identities = 471/475 (99%)
Strand = Plus / Plus
Query: 1 cttctttttgccagcccttagttttcccatttaacaaaggaaggtgttaagcttgagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctttttgccagcccttagttttcccatttaacaaaggaaggtgttaagcttgagggt 260
Query: 61 ccccaaggcctcctacagctcaaaaacagaaccaataaaactaagagggcagtgtactta 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ccccaaggcctcctacagctcaaaaacagaaacaataaaactaagagggcagtgtactta 320
Query: 121 gagtattggtttgggtctgaatggttttactttagaatctaggtgtccctagaggctggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtattggtttgggtctgaatggttttactttagaatctaggtgtccctagaggctggg 380
Query: 181 gaccagctggcctactctgtcactccctgctttactgattggttttcatggaatcatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccagctggcctactctgtcactccctgctttactgattggttttcatggaatcatttt 440
Query: 241 atttcttttcaatccctttcaccctaatacaaggtcactgacctctttccacgttggtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcttttcaatccctttcaccctaatacaaggtcactgacctctttccacgttggtct 500
Query: 301 tcgaaacacctaattcagaatatagaactgtgacttgggcggcgatgctggacctgcagc 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaaaacacctaattcagaatatagaactgtgacttgggcggcgatgctggacctgcagc 560
Query: 361 agctagatctagatgtttgatgctctacggcaacagtggctgaggacaaggtcatcagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctagatctagatgtttgatgctctacggcaacagtggctgaggacaaggtcatcagct 620
Query: 421 ctggcttttcaaggcagtttaggtctttcctgcgagaaagaaacatgttgtatct 475
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 ctggcttttcaagacagtttaggtctttcctgggagaaagaaacatgttgtatct 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
