Query= MSMg01no146_g21.b1 MSMg01no146_g21.b1 CHROMAT_FILE:
MSMg01no146_g21.b1 PHD_FILE: MSMg01no146_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:11 2005
(716 letters)
>mm_chr2_140858056_140859171
Length = 1116
Score = 1292 bits (668), Expect = 0.0
Identities = 704/716 (98%)
Strand = Plus / Minus
Query: 1 gttttctcagataccagataatgctgtaaccctctgagggactaatgcgcccaacctcac 60
||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct: 839 gttttctcagataccagataatgctgtaagactctgagggactaatgtggaaaacctcac 780
Query: 61 tagggaagctcatggttttatcaatgctgtggaacttatcaagactactatcatcagtga 120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 779 cagggaagctcatggttttatcaatgctgtggaacttatcaagactagtatcatcagtga 720
Query: 121 tgtagcaggtatactgtgagaggtgactgaggagatggctacagtcttttataaagtgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgtagcaggtatactgtgagaggtgactgaggagatggctacagtcttttataaagtgct 660
Query: 181 tataatagtgttagcatgatcacatggcacatttctaacaaaaaggtcactacaccgtga 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tataatagtgttagtatgatcacatggcacatttctaacaaaaaggtcactacaccgtga 600
Query: 241 tgtgagaaactccagctcttcgcttgtgcttgccagttactataaaatcctgggaaagac 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tgtgagaaactccagctctgcgcttgtgcttgccagttactataaaatcctgggaaagac 540
Query: 301 taagccatcatcctgggctccaatttccctagctgtgaaaatataaggtgatcaataagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 taagccatcatcctgggctccaatttccctagctgtgaaaatataaggtgatcaataagt 480
Query: 361 gatcatttaaatgatcatgaaaactcctatctgaccctgatttgtcacagcaatcctttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatcatttaaatgatcatgaaaactcctatctgaccctgatttgtcacagcaatcctttc 420
Query: 421 attagcagtaaaacctaggctggagggattgtatgtatgtatctagatgcaaacatgttt 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 419 attagcagtaaaacctaggctggagggattgtatgtgtgtatctagatgcaaacaagttt 360
Query: 481 agacatcagaacaaagacaagataaaccaactgtaagaataaaggacacaaggagaattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agacatcagaacaaagacaagataaaccaactgtaagaataaaggacacaaggagaattc 300
Query: 541 cctagctatcttccttctcattttgtataagctgactttaattcaggggtaaagtgtttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cctagctatcttccttctcattttgtataagctgactttaattcaggggtaaagtgtttt 240
Query: 601 tcttttgtctgcaatggtttttcattgagcaatcggcagagctctctgcgcaaatatcac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tcttttgtctgcaatggtttttcattgagcaatcggcagagctctctgcgcaaatatcac 180
Query: 661 acccacagggatgccttccctgaccacacaggaaagctgcctcttcacctttccac 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 acccacagggatgccttccctgaccacacaggaaagctgcctcttcacctttccac 124
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_g21.g1 MSMg01no146_g21.g1 CHROMAT_FILE:
MSMg01no146_g21.g1 PHD_FILE: MSMg01no146_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:12 2005
(698 letters)
>mm_chr2_140730298_140731398
Length = 1101
Score = 1261 bits (652), Expect = 0.0
Identities = 689/702 (98%), Gaps = 5/702 (0%)
Strand = Plus / Plus
Query: 1 ctgccctgaccgactttatagcatctcccct-tgaattgcctgcaaccagtgac--ctga 57
|||||||| |||||||||||||||||| | | || ||||||||||| ||||||| ||||
Sbjct: 201 ctgccctgcccgactttatagcatctcac-tgtggattgcctgcaagcagtgactcctga 259
Query: 58 caggataaatgaaagtcttgcctctggctggacaactctgaaaggctactttccagggaa 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggataaatgaaagtcttgcctctggctggacaactctgaaaggctactttccagggaa 319
Query: 118 ctcagcccacagcccagcaggaacactcagcttgtatgagcctagaggaacacagggact 177
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 ctcagcccacagcccagcaggaacactcagcttgtatgagcctagacgaacacagggact 379
Query: 178 ctgctaatgtgaattactgcaatatttttttt-gaaaactaatcttagatattctatttt 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 ctgctaatgtgaattactgcaatatttttttttgaaaactaatcttagatattctatttt 439
Query: 237 tttaaaaaaagtcttcaaatttaactatcctacatttctagctctaccttttaagagtta 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttaaaaaaagtcttcaaatttaactatcctacatttctagctctaccttttaagagtta 499
Query: 297 aaaacaggataacaattgcttttatttattgtattcataaatggtaggtgttataatttt 356
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 500 aaaacaggataacaattgcttttaaatattgtattcataaatgataggtgttataatttt 559
Query: 357 gcttgttgagataaatggcactggttttaatatctatatacagatgaaaagcttaccaag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcttgttgagataaatggcactggttttaatatctatatacagatgaaaagcttaccaag 619
Query: 417 agaaggatgatgtgtttatgctgagctattacaattgtcattaaaaacaatgatctgggt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agaaggatgatgtgtttatgctgagctattacaattgtcattaaaaacaatgatctgggt 679
Query: 477 ctatagagagtggtttatagaaggtttataaatgtcactggtataatgctacttgaaaaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctatagagagtggtttatagaaggtttataaatgtcactggtataatgctacttgaaaaa 739
Query: 537 tcaaagaagggaattcaaatggtgatctgtgtaggtgtgtttgtgtgcatgggtcctatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcaaagaagggaattcaaatggtgatctgtgtaggtgtgtttgtgtgcatgggtcctatt 799
Query: 597 acagctattgactatcccacagtaccaatgaagaccagcagggaggaacccgtttgactg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 acagctattgactatcccacagtaccaatgaagaccagcagggaggaacccgtttgactg 859
Query: 657 aattgtgtttcatccagactatggcagcatgaccatacttgt 698
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aattgtgtttcatccagactatggcagcatgaccatacttgt 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1101
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1091
Effective search space: 750608
Effective search space used: 750608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
