Query= MSMg01no146_i16.b1 MSMg01no146_i16.b1 CHROMAT_FILE:
MSMg01no146_i16.b1 PHD_FILE: MSMg01no146_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:26 2005
(318 letters)
>mm_chr2_8793517_8794234
Length = 718
Score = 536 bits (277), Expect = e-157
Identities = 307/323 (95%), Gaps = 12/323 (3%)
Strand = Plus / Minus
Query: 1 agttacgatgcctcagtcccacttgagacacactaagaaaacagtca-----ccccccgg 55
||||||||||||||||||||||||| |||| | ||||||||||||| ||
Sbjct: 645 agttacgatgcctcagtcccacttgggacaga-gaagaaaacagtcataagt------gg 593
Query: 56 gaagggaaggagggacttgcaagggaaattggatgggaaggggggaacctgatctggtat 115
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaagggaaggagggacttggaagggaaattggatgggaaggggggaacctgatctggtat 533
Query: 116 tgggtaagggaaaattattggttttaattataacttaaatttttcaagactttcatacat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgggtaagggaaaattattggttttaattataacttaaatttttcaagactttcatacat 473
Query: 176 gcataatgtatttacatcattttcacctatctttcttcccgattcaactgccagtccctt 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gcataatgtatttacatcattttcacctatctttcttcccgattcaactgccagtccctt 413
Query: 236 tcaaatccaaatctatagcctcttcatatatatatggattatacattgtaatgtgtatac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tcaaatccaaatctatagcctcttcatatatatatggattatacattgtaatgtgtatac 353
Query: 296 atacatatatatgatatttacat 318
|||||||||||||||||||||||
Sbjct: 352 atacatatatatgatatttacat 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_i16.g1 MSMg01no146_i16.g1 CHROMAT_FILE:
MSMg01no146_i16.g1 PHD_FILE: MSMg01no146_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:26 2005
(681 letters)
>mm_chr2_8718807_8719886
Length = 1080
Score = 1195 bits (618), Expect = 0.0
Identities = 665/684 (97%), Gaps = 7/684 (1%)
Strand = Plus / Plus
Query: 1 ggaaacacagcacaattttctagaaatgccctcaggatgaacacccccggttataatcag 60
|||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||
Sbjct: 201 ggaaacacagcacaattttctagaaatgtcctcaggatgaacattcaatgttataataag 260
Query: 61 gagtccaatatatgtcaggcactgaagaatgataaaggaagctaactggggtaattggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtccaatatatgtcaggcactgaagaatgataaaggaagctaactggggtaattggct 320
Query: 121 cttgagtctgaatcctttgagaataaagaagggtgtctattcttctttatatccacactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgagtctgaatcctttgagaataaagaagggtgtctattcttctttatatccacactg 380
Query: 181 ccactaacagtggcttccgcatagttttccagcttattagaagaacgtaccatagatcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccactaacagtggcttccgcatagttttccagcttattagaagaacgtaccatagatcga 440
Query: 241 tggcttactccagataagacatactgtgtttaggaaatagccagattctgtttccttcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcttactccagataagacatactgtgtttaggaaatagccagattctgtttccttcta 500
Query: 301 tttatatatatttgcaaatatatgataggcattttagcacagtggagccaaaaataagcg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttatatatatttgcaaatatatgataggcattttagcacagtggagccaaaaataagcg 560
Query: 361 atataaatttgactacacaggattacctagttgaacaaaacatgcagtgaatatacctaa 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atataaatttgtctacacaggattacctagttgaacaaaacatgcagtgaatatacctaa 620
Query: 421 agaaacttgaaaaatagaaaactttacataaaactcaccaaagctattgaattacttcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaacttgaaaaatagaaaactttacataaaactcaccaaagctattgaattacttcag 680
Query: 481 caatgccaaattggaaaaaaatttggg---aagatgctgtgaaaatatgctgacgcgagc 537
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 681 caatgccaaattggaaaaaa----ggggggaagatgctgtgaaaatatgctgacgcgagc 736
Query: 538 tgtgagtatgggagtacaacaaccatgacaaagcggtgcgcaacaggcatactgaattac 597
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 737 tgtgagtacgggagtacaacaaccatgacaaagcggtgcacaacaggcatactgaattat 796
Query: 598 catagtttcagattcgttggttgtgtatgagcaggatataatagtttggataaatagtta 657
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 catagtttcaaattcgttggttgtgtatgagcaggatataatagtttggataaatagtta 856
Query: 658 caaactgatgccaggattcctcaa 681
||||||||||||||||||||||||
Sbjct: 857 caaactgatgccaggattcctcaa 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1080
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1070
Effective search space: 717970
Effective search space used: 717970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
