BAC Information

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BAC

Clone NameMSMg01-146M16
Chromosome2 (Build37)
Map Location 82,165,543 - 82,165,863
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a
Downstream geneLOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146M16.T7 (MSMg01no146_m16.b1)MSMg01-146M16.TJ (MSMg01no146_m16.g1)
ACCAG350234AG350235
length1,2711,204
length of high quality
(start - end)		321 (126 - 446)454 (129 - 582)
definitionCHROMAT_FILE: MSMg01no146_m16.b1 PHD_FILE: MSMg01no146_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:59 2005CHROMAT_FILE: MSMg01no146_m16.g1 PHD_FILE: MSMg01no146_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATACTTTNNTNNTACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCCTGGTAATTGATTCAACGTTTAAATTTGATCTGCTCCTGA
TGCACATTAAAGTTTGCCCTTTACTGCCCTGTGACCCCAAATCTTAGCTA
TAACAACGTTTTTAAATGGACTTCTAGTTACTTGATTATACTGATTTACA
AAACATAGATCGTATTCAGCTCTTATTCTTTTTTCTAGTATACTCATAGT
CATATAATAATTTCTACCTTGTATGTTTATTAGCACATTTGAGGACTTAT
GTGTAAAAATCTGCACCATGTTTGTTTAATGATTTACTTTTAGATTAGAG
TTTCATTCTTTATGTTATTCTATGTTCTTATTGATTCCTATGTACCTAAT
ACTATTTATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGCCG
CTCCCTTTTTTCTTCTTTCTTTTTTTTCTTNTTTTTTTTTTTTTTTTTCT
TTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
TCTCTTTCTTTTCTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTCTTTT
TTTTCTTTTTTTTTTTTTTCTTTCTTTTTCTTTTTTTCCTTTTTTTTTTT
TCTTCTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTCTTTTTTTTT
TCTCTTTTTTCTTTTTTTTTTCCTCTTTTTTTTTTTCTTTTTTTCTTTTC
TTTCTTCTTTCCTTTTTTTTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTCCTTTTTTTTTCCTTTTTTTTTTTTTTCTTTTTTCCTTTTTCCTTC
TTCTTTTCTTTTTTTTTTTTTTTCTTCCTTTTTTTTTTTTTTTCTTTCTT
TTTTTTCTCTTTCTTTCTCTTTTTTTTTTTTCTTCTTTTTTTTTTTTTTT
TTTTCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTCTTTTCTTT
TTTTTTTTCTTTTTTTCTTCTTTNTTTCTTTTTCCTTTCTTCTTTTTTTT
TTTTTCCTCTTCTTTTTTTTTTCTTCTCTTCTTTTTTTCTTTCTTTTNTT
TTTTTTTTTTTNTTCTTTCTTCTTTTTTTTCTTNTTCCTTTTTTTTCTCT
NCCNTCTTTTTTTTTTTTCTTTTCTTTTTCTTTTTTCTCTTTTTCTCTTT
TTTTCTTTTTNTCTCTCTTATTCCTTCTTTTCTCTTCTTTCTCTTTTTTT
CTTCTTNTTCTCTTTTNTCTT

NCCTATTTTTTTTTTTAAGAGGTGAGNCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTATATAATGAAACCAGGTT
TAAGAGCCAAACAGTCCCCCTTTATCTGATAAAATCCCCACCTTCCTGAA
GCTATTTCGATCTATTTTCTCCCTGTATTAAGGACCTTCTCTGAAGGACA
GGGTGTTTAGCCCCACTCAGAACTGTCTGTCCTTTCACTGTCCTATAAAC
ATTCTCTTAAAGTATCCATTGTTTTATATATATATATATATATATATATA
TATATATATATATACACACTTTTTATTAGGTATTTACCTCATTTACATTT
CCTTTTTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTC
CAATGCTATTTCAAAAATCCCCCATACCCACCCACCCCCACTCCCCTACC
CGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATA
AAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCC
ATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTA
GTTCATAATGTTGATCCACCTATAGGGTTGCAGATCCTTTTATCTCCTTG
GGTACTTTCTCTAGCTCCTCTCTTGTGAGCCCTGTGATCCATCCTTTACT
TGACTGTGTACATCCACTTTCTGTGTTTGTTAGTCCTCCGTTTTTTTCTC
TTTTAAAAAGCTACTTCTGGTTTTTTTTTTTTTAATTCTTCGCTGTGTTT
GCTTTTGTTTTTTTGTCTTTTATTCTTTTTTTGTTTTTTTTTCTGCTAAA
TTTTTTTTTCTCTTCCTCCTTTCTTCTCTTATCCTCTTTTCTTTTTTCTT
GTTTTTTTTCTTTTCTTTTATTTTCCCTCTTTTCTCTTTCTTTCTTTTTT
TTCTTTTTTTTATTTTTTTTTTCTCTTTTTTTCATCTTTTCTTTTATTTT
CTTTTCTTTTTCTATTTTAACTCTATTTATTTTTATTTTTTTTCTTAATT
TTATTTTTTATTCATTTTTATTTTTTCTTTTTTATTTTTTATTTTTATCT
TTTCAATTCTCTTTTCTATTTCTCCCAATATTTNTTTATTCCTTTTTCTT
TAACTCTCTTATTCTTTTATCTTTTTCTTTTTGATTTTTTTCTCTTTTTT
TTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_m16.b1 MSMg01no146_m16.b1 CHROMAT_FILE:
MSMg01no146_m16.b1 PHD_FILE: MSMg01no146_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:59 2005
         (321 letters)



>mm_chr2_82165383_82166104
          Length = 722

 Score =  559 bits (289), Expect = e-164
 Identities = 313/321 (97%), Gaps = 1/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccctgtgaccccaaatcttagctataacaacgtttttaaatggacttc-tagttacttg 59
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 481 gccctgtgacctcaaatcttagctataacaacgtttttaaatggacttcttagttacttg 422

                                                                       
Query: 60  attatactgatttacaaaacatagatcgtattcagctcttattcttttttctagtatact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 421 attatactgatttacaaaacatagatcgtattcagctcttattcttttttctagtctact 362

                                                                       
Query: 120 catagtcatataataatttctaccttgtatgtttattagcacatttgaggacttatgtgt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 361 catagtcatataataatttctaccttgtatgtttattagcacatttgaggacttatgtga 302

                                                                       
Query: 180 aaaaatctgcaccatgtttgtttaatgatttacttttagattagagtttcattctttatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaaatctgcaccatgtttgtttaatgatttacttttagattagagtttcattctttatg 242

                                                                       
Query: 240 ttattctatgttcttattgattcctatgtacctaatactatttatatatatgtgtgtgtg 299
           ||||||| |||||||||||||||||||||||||||||||||  |||||| ||||||||||
Sbjct: 241 ttattctgtgttcttattgattcctatgtacctaatactatgcatatatgtgtgtgtgtg 182

                                
Query: 300 tgtgtgtgtgtgtgtgtgtgt 320
           |||||||||||||||||||||
Sbjct: 181 tgtgtgtgtgtgtgtgtgtgt 161


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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