BAC Information

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BAC

Clone NameMSMg01-146P24
Chromosome2 (Build37)
Map Location 37,405,670 - 37,406,391
singlet/doubletsinglet
Overlap geneRabgap1
Upstream geneOlfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Gpr21
Downstream gene6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2, Nek6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P24.T7 (MSMg01no146_p24.b1)MSMg01-146P24.TJ (MSMg01no146_p24.g1)
ACCAG350390AG350391
length1,1621,166
length of high quality
(start - end)
722 (87 - 808)612 (115 - 726)
definitionCHROMAT_FILE: MSMg01no146_p24.b1 PHD_FILE: MSMg01no146_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:27 2005CHROMAT_FILE: MSMg01no146_p24.g1 PHD_FILE: MSMg01no146_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTTTGNNNNNAATCACTGGGCGCTAACACTCCTAAGGGAGAGGATCCG
CGGAATTCACATGGTAGAAGTAACCATTTAACTCCTGAGTCTATCCTCTG
ACCTACATAAGTGACACATGGTGCATGTGGAAATGGCACACATTGATATA
TGTCTCCATACACAGAAAGAGTGTAACTAAATAAATGGAAAATAAAAGAG
TTAGTATTCAGAGTTTGACTGAAGGGATGAGCGCAGGGCTCTACCCCTAA
GCCCTGTGCTGAGGAACCTCTCAGTAGTGCTACTTCTCAGAGCCAAGTGC
TAACATGAACTTGTTCCACTTAAGTTACAACCCACACTTAGTCCAGAAGT
TTGGTTTATTTTTCTTGAAAGAAACCTTAAACAGAACAAGGGTTCAATTT
CAGTTTTAGTCTTGCTGAGGGTAACATTACCTCTTTGTGTGATGCTATAA
TTTTCAAAGCCTTCTTATAGGAGTTAGCTACTAGATCTTTCTGAGCTCTG
GAGCAGAATACATAGCCCATCCTCTCTCCTGAGTTTAAGTACAAGAAAAA
ATGAGTCTGGATATTTGAGTAGAGACTATGTCTCTTTTGGCATAAGTATT
TTCATGCTTACTTTGTGACAGAATTTAGTAAAGAATAGCGTTCTGTCTTT
GCAGAATTTATGTATCTAATGCTTTACAAAAAACATGATTGATGGCAGAC
TATGAAGGAAGACCTAATCCTGTTCAAGCATTAACTAGGCACTGGTGGTA
TGGTGGCAAGCAAAACAGACACAGAACACAACATAACAGTAAGGATGCAG
TAATTAAGAAGCTGTGGACTTGCGAGGTTCCATGAAGGAGTTGAGTTGGT
GCTTTAAGGACATAAAGAAGAGCTGGTCTGATATGTGTGAACTGCCATCA
CAATCACTGTTCTTGCTTCAAGGGCTTCTGCCCTTCAGTTAGCAAGAAAG
CCCACTCTGTTTCCCGGAAGCTCAGCTGTTGGGGCAACCTGAACTAACTG
GTTTCTGGAATGAAAACATCCAAGCTTCCTAAATTTAACCCTTATTGAAA
AACTTTTAAAGAAACCCCATGTTTTTCTTTTATGGAAGTAAATGCCCCCA
TTGGAGTCCAAAAATTTTTTGGTGTAAAAAAACACACCTCTTAGTCTTTA
AAGAATAGTATA
NNAAATACGATTGGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAAAGTGCCTGCATGTTGAACAGTTGTCG
ATCTGCCCTTTAATTGCTGTCTTCCAAGAAAAAGCTTCTGTGGTGAGAGT
TGAACAATGCACTGATCTGTGGGTATATCAATAAGTCATTAGGAGTTGTT
TTACTGATATGTCCATTTAGCAGAATAATAAATAGTAGGAAGTTTTCTGT
TAGGGCTTGTACCTGTCTAGTCACAGGTTCTCGTTGTTGTTAACAGTGTC
AGGTGTGGGGTCCATTTTGTAGAGTGGGCTGTCGATCAAACTTTAAAAAG
AGGTTGTTTACTCCTATGATGTTTGTGCAGGAGTTGTACTATGATTCATG
TTTTGTCAGGCCAGTTGTTATTGTAGCTCACAGACTATATTATAGCTTGC
AGTTGGATGACTTTGATAATTAACTTTTTTCCTCTGGTCATGAATATAGA
TAGCACTTTCTATCACCATGAAAGCTGTCTAGCAGTGATGAAGTTTCCAG
TTGAGTACCAGCTAGAATTCTCTATGTTCTGTTGCACAAGTGTGTGTGTT
TTTCAGCAATAGTGTCTTACCCTCAAGTTCTGGAGAGTATCTGATAACAT
TGTCAATGACCTGCAATGCTTATGAAATGCCATCTTTCCTGGTACTGGGG
GTTTTATCCACTATCCAATAGTGTATGCTTTCTAAGTGGGGTATTGTTCC
CCATTATAGTATAGTTCCATTTAAACTGTTTTTTTATATGTGTATATATT
TTGGAACCTAGAGGAATATCTTTCAGTCTTGCCTTTAAGGTGCATTAATG
CCTCCCCCATTCCATCTTCTACCATCTCATTTTAACCCTTCCTGCCTCAT
GTTTTTCCTTTCCCCCTTTTATAACACTGTAATTCTAATGGCCTTCTATT
TAAAAAAATCCCCCTCCCCCTCCTATAGGCCCTCCTACTTAGTTAACTTA
AACCTAATTTTTCTGGGGGGTTATTTCCCAATTTGAAAATAACATTTTAT
TCTTAAATCTGTGAAAAGAGGTTACACTTCCCCTTTTTATGTAAAAAATG
GTTGTTCCCCATTCTCTTTGTTAGGAAACATATTTTCTCCCGNTTCTACA
CCAATCTATTATACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p24.b1 MSMg01no146_p24.b1 CHROMAT_FILE:
MSMg01no146_p24.b1 PHD_FILE: MSMg01no146_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:27 2005
         (722 letters)



>mm_chr2_37405470_37406591
          Length = 1122

 Score = 1373 bits (710), Expect = 0.0
 Identities = 719/722 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtctatcctctgacctacataagtgacacatggtgcatgtggaaatggcacacattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtctatcctctgacctacataagtgacacatggtgcatgtggaaatggcacacattga 260

                                                                       
Query: 61  tatatgtctccatacacagaaagagtgtaactaaataaatggaaaataaaagagttagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatatgtctccatacacagaaagagtgtaactaaataaatggaaaataaaagagttagta 320

                                                                       
Query: 121 ttcagagtttgactgaagggatgagcgcagggctctacccctaagccctgtgctgaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagagtttgactgaagggatgagcgcagggctctacccctaagccctgtgctgaggaa 380

                                                                       
Query: 181 cctctcagtagtgctacttctcagagccaagtgctaacatgaacttgttccacttaagtt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcagtagtgctacttctcagagtcaagtgctaacatgaacttgttccacttaagtt 440

                                                                       
Query: 241 acaacccacacttagtccagaagtttggtttatttttcttgaaagaaaccttaaacagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaacccacacttagtccagaagtttggtttatttttcttgaaagaaaccttaaacagaa 500

                                                                       
Query: 301 caagggttcaatttcagttttagtcttgctgagggtaacattacctctttgtgtgatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagggttcaatttcagttttagtcttgctgagggtaacattacctctttgtgtgatgct 560

                                                                       
Query: 361 ataattttcaaagccttcttataggagttagctactagatctttctgagctctggagcag 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 561 ataattttcaaagccttcttataggagttagctactagatctttctgagctctgaagcag 620

                                                                       
Query: 421 aatacatagcccatcctctctcctgagtttaagtacaagaaaaaatgagtctggatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatacatagcccatcctctctcctgagtttaagtacaagaaaaaatgagtctggatattt 680

                                                                       
Query: 481 gagtagagactatgtctcttttggcataagtattttcatgcttactttgtgacagaattt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagtagagactatgtctcttttggcataagtattttcatgcttactttgtgacagaattt 740

                                                                       
Query: 541 agtaaagaatagcgttctgtctttgcagaatttatgtatctaatgctttacaaaaaacat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtaaagaatagcgttctgtctttgcagaatttatgtatctaatgctttacaaaaaacat 800

                                                                       
Query: 601 gattgatggcagactatgaaggaagacctaatcctgttcaagcattaactaggcactggt 660
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggttgatggcagactatgaaggaagacctaatcctgttcaagcattaactaggcactggt 860

                                                                       
Query: 661 ggtatggtggcaagcaaaacagacacagaacacaacataacagtaaggatgcagtaatta 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ggtatggtggcaagcaaaacagacacagaacacaacataacagtaaggatgcagtaatta 920

             
Query: 721 ag 722
           ||
Sbjct: 921 ag 922


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)